Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 7.9e-75 284.3 212 100.0
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.8e-58 229.9 169 84.0
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 5.9e-54 214.9 184 67.4
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.3e-48 197.2 164 73.2
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.6e-33 146.4 160 50.6
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 1.3e-32 144.1 161 55.3
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.8e-32 142.9 167 52.1
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 3.1e-31 139.4 159 53.5
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 9.1e-31 137.9 160 48.1
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 2.7e-30 136.3 164 50.6
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.9e-29 132.9 164 48.8
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.1e-28 131.0 166 48.8
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 3.2e-28 129.4 166 48.8
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 3.2e-28 129.4 162 50.0
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 4.2e-28 129.0 160 48.1
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 5.5e-28 128.6 120 60.0
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 7.2e-28 128.3 164 48.2
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.2e-27 127.5 160 46.9
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 2.1e-27 126.7 164 48.2
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 2.7e-27 126.3 163 48.5
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 4.7e-27 125.6 160 48.1
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 6.1e-27 125.2 164 47.6
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 6.1e-27 125.2 167 45.5
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 8.0e-27 124.8 161 47.2
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.0e-27 124.8 164 47.0
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 8.0e-27 124.8 161 49.1
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 8.0e-27 124.8 117 57.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.0e-26 124.4 159 47.2
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.0e-26 124.4 155 47.1
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.0e-26 124.4 155 47.1
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.4e-26 124.0 120 52.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.8e-26 123.6 166 44.6
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.3e-26 123.2 161 46.6
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 2.3e-26 123.2 161 42.9
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 5.2e-26 122.1 164 43.9
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 8.8e-26 121.3 167 47.3
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.5e-25 120.6 161 47.2
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.5e-25 120.6 159 47.8
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 2.0e-25 120.2 162 53.7
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.0e-25 120.2 162 45.7
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 5.7e-25 118.6 164 45.1
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 7.5e-25 118.2 159 46.5
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 9.8e-25 117.9 164 43.9
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 9.8e-25 117.9 164 43.9
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.3e-24 117.5 123 55.3
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.3e-24 117.5 162 48.1
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 2.8e-24 116.3 162 45.1
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 2.8e-24 116.3 161 44.7
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.8e-24 115.5 162 46.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.1e-23 114.4 118 54.2
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.1e-23 114.4 125 52.0
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.1e-23 114.4 162 47.5
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.1e-23 114.4 130 51.5
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 1.1e-23 114.4 122 51.6
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.4e-23 114.0 162 42.6
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.4e-23 113.2 159 47.2
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 2.4e-23 113.2 122 51.6
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.1e-23 112.8 157 45.2
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 7.0e-23 111.7 125 51.2
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 9.1e-23 111.3 171 44.4
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.2e-22 110.9 171 44.4
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 1.2e-22 110.9 117 47.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.2e-22 110.9 117 47.0
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-22 110.9 166 42.8
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-22 110.2 117 49.6
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-22 110.2 117 49.6
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 2.0e-22 110.2 165 42.4
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 7.7e-22 108.2 172 45.3
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.7e-21 107.1 157 42.7
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.7e-21 107.1 166 50.0
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.2e-21 106.7 161 41.0
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 2.9e-21 106.3 113 52.2
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.9e-21 106.3 170 50.0
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.8e-21 105.9 159 45.3
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 8.5e-21 104.8 178 49.4
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 8.5e-21 104.8 159 44.7
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 8.5e-21 104.8 122 45.1
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.9e-20 103.6 161 42.9
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.9e-20 103.6 120 49.2
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.9e-20 103.6 145 44.1
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 5.5e-20 102.1 122 43.4
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 5.5e-20 102.1 156 43.6
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 9.4e-20 101.3 122 50.0
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.2e-19 100.9 159 42.1
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.1e-19 100.1 121 47.9
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 2.1e-19 100.1 161 51.6
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 2.1e-19 100.1 179 47.5
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 3.6e-19 99.4 185 47.0
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.1e-19 98.6 121 49.6
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 8.0e-19 98.2 121 42.1
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 1.0e-18 97.8 165 50.9
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.4e-18 97.4 122 45.1
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 2.3e-18 96.7 166 41.6
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.0e-18 96.3 121 48.8
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 1.2e-17 94.4 167 43.1
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-17 94.4 113 48.7
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.2e-17 94.4 121 43.8
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 1.5e-17 94.0 167 43.1
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.0e-17 93.6 119 44.5
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 2.6e-17 93.2 117 45.3
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 3.4e-17 92.8 149 44.3
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 4.4e-17 92.4 166 41.6
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 4.4e-17 92.4 108 51.9
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 4.4e-17 92.4 108 51.9
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-17 92.0 108 51.9
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-17 92.0 108 51.9
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 5.7e-17 92.0 116 44.8
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 7.5e-17 91.7 159 40.9
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 9.8e-17 91.3 121 46.3
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 9.8e-17 91.3 117 44.4
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 9.8e-17 91.3 115 44.3
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.3e-16 90.9 118 44.9
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-16 90.9 106 46.2
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-16 90.9 109 48.6
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 1.3e-16 90.9 117 43.6
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.7e-16 90.5 140 42.9
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.7e-16 90.5 140 43.6
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-16 90.5 108 50.9
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.2e-16 90.1 130 43.8
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 2.8e-16 89.7 176 39.2
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.8e-16 89.7 115 44.3
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 4.9e-16 89.0 176 38.6
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 1.1e-15 87.8 115 43.5
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.1e-15 87.8 159 39.6
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 4.1e-15 85.9 108 50.0
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 5.4e-15 85.5 167 41.9
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 5.4e-15 85.5 108 50.0
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 9.2e-15 84.7 118 44.9
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 9.2e-15 84.7 99 51.5
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.2e-14 84.3 121 43.0
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-14 84.0 108 50.0
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 2.0e-14 83.6 115 44.3
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 2.7e-14 83.2 173 42.8
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 2.7e-14 83.2 173 42.8
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 3.5e-14 82.8 125 44.0
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 4.5e-14 82.4 174 41.4
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.5e-14 82.4 107 47.7
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 5.9e-14 82.0 125 43.2
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 7.7e-14 81.6 159 39.0
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 7.7e-14 81.6 114 43.9
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.0e-13 81.3 126 38.1
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-13 81.3 108 49.1
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-13 81.3 108 49.1
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 1.3e-13 80.9 167 41.3
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 1.7e-13 80.5 120 42.5
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-13 80.5 108 49.1
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-12 77.8 109 42.2
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-12 77.8 124 37.9
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 4.3e-12 75.9 116 38.8
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-12 75.9 110 49.1
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-11 74.3 112 42.0
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 3.6e-11 72.8 93 47.3
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 3.6e-11 72.8 93 47.3
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.6e-11 72.8 115 35.7
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.7e-11 72.4 99 46.5
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 8.0e-11 71.6 104 43.3
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 8.0e-11 71.6 115 39.1
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.0e-10 71.2 130 41.5
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-10 71.2 124 41.9
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-10 71.2 124 41.9
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 1.0e-10 71.2 113 46.0
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.8e-10 70.5 119 36.1
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.8e-10 70.5 113 42.5
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 4.0e-10 69.3 115 38.3
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 6.8e-10 68.6 120 39.2
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-09 67.4 103 39.8
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 2.6e-09 66.6 116 37.9
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.4e-09 65.9 135 35.6
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.3e-08 64.3 116 37.9
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.7e-08 63.9 144 34.0
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 6.4e-08 62.0 86 44.2
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.1e-07 61.2 128 34.4
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 2.4e-07 60.1 104 41.3
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.2e-07 59.7 116 39.7
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.7e-06 56.6 99 40.4
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 4.6e-06 55.8 117 38.5


User provided reference genes

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