Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 9.5e-107 390.2 197 100.0
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 4.0e-97 358.2 197 91.4
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 9.8e-96 353.6 197 88.8
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 1.7e-95 352.8 197 87.8
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 1.9e-94 349.4 197 88.8
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 2.4e-94 349.0 198 87.4
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 1.2e-93 346.7 198 87.4
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 2.7e-93 345.5 197 87.8
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 1.7e-92 342.8 206 84.5
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.1e-91 340.1 208 83.2
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 7.3e-83 310.8 194 78.9
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 7.5e-80 300.8 169 89.3
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 2.1e-77 292.7 197 73.6
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.0e-76 290.4 197 73.6
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 1.3e-76 290.0 197 72.6
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 1.3e-76 290.0 197 73.1
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.7e-76 289.7 197 73.1
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 2.3e-76 289.3 191 74.9
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 3.9e-76 288.5 197 73.1
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 3.9e-76 288.5 197 72.6
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 5.1e-76 288.1 196 73.0
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 6.6e-76 287.7 196 72.4
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 1.1e-75 287.0 197 73.6
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.5e-75 286.6 197 72.6
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 4.3e-75 285.0 197 71.6
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 9.6e-75 283.9 194 71.6
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 9.6e-75 283.9 197 71.6
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 9.6e-75 283.9 197 72.6
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 1.2e-74 283.5 192 74.0
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 2.8e-74 282.3 197 70.1
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 2.8e-74 282.3 197 73.1
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 4.7e-74 281.6 177 81.4
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 6.2e-74 281.2 193 71.0
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 1.1e-73 280.4 192 72.4
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.4e-73 280.0 197 70.6
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 4.0e-73 278.5 193 71.0
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 5.2e-73 278.1 193 71.0
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 5.2e-73 278.1 188 73.9
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 5.2e-73 278.1 193 70.5
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 6.8e-73 277.7 191 72.3
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 8.9e-73 277.3 193 71.0
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 8.9e-73 277.3 193 71.0
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 8.9e-73 277.3 193 69.9
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 2.6e-72 275.8 196 69.4
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.4e-72 275.4 192 71.9
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 4.4e-72 275.0 190 73.7
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 7.6e-72 274.2 193 69.4
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 1.7e-71 273.1 193 68.9
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 1.7e-71 273.1 197 68.0
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 2.2e-71 272.7 185 74.1
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 2.9e-71 272.3 193 70.5
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 2.9e-71 272.3 197 69.0
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 4.9e-71 271.6 198 69.7
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 8.4e-71 270.8 193 69.9
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 1.4e-70 270.0 197 67.5
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 1.9e-70 269.6 188 71.3
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 1.9e-70 269.6 191 70.7
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 2.4e-70 269.2 191 70.7
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 3.2e-70 268.9 196 70.9
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 4.2e-70 268.5 191 70.2
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 5.4e-70 268.1 188 71.3
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 7.1e-70 267.7 191 70.2
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 7.1e-70 267.7 190 70.0
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.1e-69 266.2 191 69.6
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 6.0e-69 264.6 192 67.2
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 6.0e-69 264.6 191 70.7
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.0e-68 263.8 191 68.6
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.3e-68 263.5 195 68.2
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 3.9e-68 261.9 187 70.6
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 5.1e-68 261.5 197 64.0
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 6.6e-68 261.2 191 68.1
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 1.1e-67 260.4 189 69.8
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 1.9e-67 259.6 171 75.4
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 9.6e-67 257.3 190 69.5
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 1.3e-66 256.9 189 68.8
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 1.6e-66 256.5 171 75.4
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 1.6e-66 256.5 191 68.6
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 2.1e-66 256.1 188 66.5
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 3.6e-66 255.4 192 68.8
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 4.8e-66 255.0 185 69.7
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 1.1e-65 253.8 188 65.4
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 1.1e-65 253.8 186 69.4
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.8e-65 253.1 197 65.0
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 2.4e-65 252.7 171 73.1
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.4e-65 252.7 171 73.1
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 4.0e-65 251.9 179 70.9
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 5.3e-65 251.5 168 75.0
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 6.9e-65 251.1 167 73.7
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 3.4e-64 248.8 191 64.4
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 4.4e-64 248.4 179 69.3
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 9.9e-64 247.3 187 67.9
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 2.9e-63 245.7 177 70.6
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 3.8e-63 245.4 193 60.6
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 3.8e-63 245.4 170 71.8
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 4.9e-63 245.0 168 72.6
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 6.4e-63 244.6 171 70.8
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 1.1e-62 243.8 193 60.1
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.1e-62 243.8 166 72.9
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 4.2e-62 241.9 190 65.3
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 7.1e-62 241.1 195 57.4
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 9.3e-62 240.7 170 71.8
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.6e-61 240.0 194 64.9
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 6.0e-61 238.0 168 70.8
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.0e-60 237.3 171 68.4
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 1.3e-60 236.9 174 67.8
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 1.7e-60 236.5 168 70.2
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 2.3e-60 236.1 193 62.2
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 3.0e-60 235.7 171 69.6
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.9e-59 233.0 193 60.6
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.9e-59 233.0 171 67.8
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.5e-59 232.6 165 68.5
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.3e-58 230.3 192 56.8
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.1e-57 225.7 190 62.1
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.2e-56 223.8 188 63.3
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 2.0e-56 223.0 190 58.9
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 2.6e-56 222.6 178 64.6
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.1e-54 217.2 171 64.3
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.1e-54 217.2 193 59.6
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.7e-53 212.6 189 54.0
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.3e-52 210.3 143 74.1
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 3.0e-52 209.1 143 74.1
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 1.1e-49 200.7 193 54.4
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 2.4e-49 199.5 134 70.9
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.1e-49 199.1 190 57.4
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 3.2e-46 189.1 190 51.6
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 8.7e-44 181.0 119 76.5
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 1.8e-41 173.3 134 60.4
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 1.2e-40 170.6 112 75.0
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 3.4e-40 169.1 188 50.5
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 4.5e-40 168.7 119 69.7
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.3e-36 157.1 171 52.6
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 8.7e-36 154.5 185 42.7
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 9.7e-35 151.0 171 50.9
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 8.8e-20 101.3 136 46.3
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 1.6e-13 80.5 58 60.3
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 1.0e-12 77.8 52 65.4
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 1.0e-12 77.8 61 62.3
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 1.7e-10 70.5 174 33.9
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 8.2e-10 68.2 175 31.4
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 4.1e-09 65.9 174 31.0
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 1.2e-08 64.3 178 31.5
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.2e-08 64.3 194 30.9
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.6e-08 63.2 173 29.5
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 2.9e-07 59.7 183 29.0
MCO11G203 Micromonas commoda HOM05D026393 ORTHO05D028829 6.5e-07 58.5 202 31.7
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 8.5e-07 58.2 170 27.6
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 8.5e-07 58.2 189 27.5
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.9e-06 57.0 154 29.2
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 2.5e-06 56.6 175 31.4
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 2.5e-06 56.6 56 48.2
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 9.4e-06 54.7 175 26.3


User provided reference genes

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