Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 4.7e-228 795.0 727 100.0
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.4e-192 677.2 727 91.2
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 1.5e-181 640.6 727 87.5
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 6.9e-171 605.1 729 73.4
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 2.0e-146 523.9 728 63.3
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.9e-136 490.7 729 66.0
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 8.0e-135 485.3 728 72.0
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 1.8e-118 431.0 730 66.2
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 1.2e-117 428.3 704 67.5
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 1.0e-110 405.2 704 65.5
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 1.0e-110 405.2 704 64.9
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 1.5e-109 401.4 706 69.3
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 6.4e-108 396.0 706 62.3
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 9.5e-104 382.1 703 68.0
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 2.9e-100 370.5 704 69.0
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 1.9e-96 357.8 704 42.5
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 2.5e-96 357.5 705 61.4
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 2.8e-95 354.0 705 61.1
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 2.8e-95 354.0 705 61.1
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.3e-79 302.0 731 55.5
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 3.4e-69 267.3 688 45.6
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 7.6e-69 266.2 692 39.7
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 1.5e-61 241.9 729 45.1
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 3.5e-58 230.7 542 50.4
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.3e-57 228.8 535 33.8
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.5e-56 225.3 556 48.7
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.1e-54 217.6 551 40.5
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 3.1e-54 217.6 534 41.0
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 3.2e-51 207.6 693 39.4
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 7.2e-51 206.5 543 39.8
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 9.3e-51 206.1 776 44.7
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.2e-50 205.7 529 43.1
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.7e-50 204.5 693 33.2
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 3.5e-50 204.1 541 44.2
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 5.1e-49 200.3 584 48.3
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 8.7e-49 199.5 604 48.3
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.5e-48 198.7 546 39.4
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 1.9e-48 198.4 526 42.0
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.7e-47 194.1 569 32.3
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 5.3e-46 190.3 508 51.2
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.2e-45 189.1 555 47.4
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.2e-45 189.1 570 32.6
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.2e-45 189.1 538 36.4
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.5e-45 188.7 574 31.4
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 2.2e-44 184.9 541 50.3
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 8.5e-44 183.0 724 34.9
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 1.2e-42 179.1 535 31.2
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.0e-41 176.0 699 37.3
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.8e-41 175.3 730 51.5
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 9.7e-40 169.5 635 40.0
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.2e-37 162.5 554 46.9
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 1.5e-37 162.2 537 35.8
BolC1t04796H Brassica oleracea HOM05D004642 ORTHO05D005466 2.6e-37 161.4 277 59.6
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 7.7e-37 159.8 531 45.4
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 1.7e-36 158.7 516 47.3
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 2.9e-36 157.9 437 41.6
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.9e-36 157.9 481 41.0
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 1.4e-35 155.6 521 37.4
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 2.5e-35 154.8 533 45.0
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.5e-35 154.8 531 44.4
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 2.5e-35 154.8 544 42.5
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 2.5e-35 154.8 640 41.7
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 7.2e-35 153.3 208 40.9
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 7.2e-35 153.3 510 37.3
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.2e-34 152.5 534 33.7
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 2.7e-34 151.4 506 39.5
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 2.7e-34 151.4 486 45.9
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 4.7e-34 150.6 467 30.6
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 6.1e-34 150.2 214 52.3
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.4e-33 149.1 535 34.2
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.8e-33 148.7 519 35.6
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 1.8e-33 148.7 709 37.8
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 2.3e-33 148.3 394 37.8
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 2.0e-32 145.2 532 38.7
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.0e-32 145.2 433 44.8
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 5.7e-32 143.7 374 48.1
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 5.7e-32 143.7 569 40.9
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 9.7e-32 142.9 349 49.9
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 9.7e-32 142.9 349 49.9
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 9.7e-32 142.9 533 43.3
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 3.7e-31 141.0 732 45.9
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 4.8e-31 140.6 533 43.2
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 8.2e-31 139.8 524 42.0
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.8e-30 138.7 542 44.6
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.8e-30 138.7 620 35.3
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.2e-29 136.0 518 30.1
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 1.6e-29 135.6 265 43.0
BolC1t04793H Brassica oleracea HOM05D004642 ORTHO05D005466 5.9e-29 133.7 252 42.9
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 7.7e-29 133.3 538 50.6
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 7.7e-29 133.3 650 35.1
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.3e-28 132.5 481 33.9
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 2.2e-28 131.7 681 27.0
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.5e-27 129.0 568 45.4
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.5e-27 129.0 199 45.2
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.9e-27 128.6 482 42.1
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 9.4e-27 126.3 711 38.0
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 6.1e-26 123.6 481 35.6
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 8.0e-26 123.2 650 37.4
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.8e-25 122.1 201 42.8
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 8.8e-25 119.8 728 39.8
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 1.5e-24 119.0 482 34.2
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.0e-24 118.6 143 53.1
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 2.0e-24 118.6 556 32.6
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 9.7e-24 116.3 478 31.8
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 2.8e-23 114.8 464 45.5
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 2.8e-23 114.8 464 45.5
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 3.7e-23 114.4 177 44.6
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 1.4e-22 112.5 524 37.8
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 1.8e-22 112.1 452 34.5
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 5.3e-22 110.5 177 43.5
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 1.2e-21 109.4 631 42.6
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 2.0e-21 108.6 447 38.5
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 2.7e-21 108.2 489 41.3
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 7.7e-21 106.7 544 32.0
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 3.8e-20 104.4 460 52.0
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 1.9e-19 102.1 223 39.0
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.9e-19 102.1 431 31.6
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 2.7e-18 98.2 678 31.9
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 3.6e-18 97.8 58 94.8
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 8.0e-18 96.7 501 32.3
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 3.0e-17 94.7 455 47.7
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 3.0e-17 94.7 499 38.7
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 8.8e-17 93.2 158 39.2
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 7.5e-16 90.1 532 34.8
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 1.3e-15 89.4 113 48.7
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 1.3e-15 89.4 499 34.5
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 8.3e-15 86.7 212 34.4
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 1.8e-14 85.5 201 34.8
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 5.4e-14 84.0 461 34.9
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.6e-13 82.4 550 33.5
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 4.5e-13 80.9 88 53.4
BolC1t04794H Brassica oleracea HOM05D015723 ORTHO05D003275 1.0e-12 79.7 55 72.7
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 1.0e-12 79.7 104 45.2
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.0e-12 79.7 408 33.6
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.7e-12 79.0 58 75.9
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 2.2e-12 78.6 396 51.5
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 6.5e-12 77.0 429 20.7
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.5e-11 75.1 429 20.3
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 7.2e-11 73.6 129 34.9
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.6e-10 72.4 556 33.1
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 8.0e-10 70.1 432 33.3
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 8.8e-09 66.6 528 45.5
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.2e-08 66.2 92 41.3
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 2.0e-08 65.5 449 28.7
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 4.4e-08 64.3 159 30.8
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.8e-07 61.6 512 18.9
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 1.8e-06 58.9 93 37.6
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 2.4e-06 58.5 335 22.7
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 5.4e-06 57.4 184 25.0
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 9.2e-06 56.6 123 33.3


User provided reference genes

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