Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 2.3e-62 242.3 142 100.0
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 5.5e-56 221.1 126 92.1
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 5.9e-50 201.1 122 86.9
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 6.5e-49 197.6 126 84.9
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 8.5e-49 197.2 126 85.7
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 1.7e-44 183.0 126 78.6
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 1.7e-44 183.0 127 81.1
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 1.7e-44 183.0 127 81.1
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 1.7e-44 183.0 127 81.1
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 4.1e-43 178.3 127 78.7
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 4.1e-43 178.3 127 78.7
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 3.2e-32 142.1 96 78.1
CARHR091020 Cardamine hirsuta HOM05D007527 ORTHO05D009523 3.0e-22 109.0 80 76.2
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 1.6e-18 96.7 126 46.8
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 5.9e-18 94.7 125 48.8
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 5.9e-18 94.7 125 48.8
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 1.7e-17 93.2 121 47.1
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 2.3e-17 92.8 116 47.4
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 3.8e-17 92.0 125 48.0
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 1.9e-16 89.7 121 45.5
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 4.7e-15 85.1 124 43.5
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 6.1e-15 84.7 46 93.5
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 1.4e-14 83.6 98 43.9
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 4.0e-14 82.0 121 47.1
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 6.8e-14 81.3 122 44.3
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 1.2e-13 80.5 137 41.6
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 1.2e-13 80.5 134 40.3
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 2.6e-13 79.3 134 38.8
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 1.7e-12 76.6 68 57.4
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 1.7e-12 76.6 79 55.7
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 2.2e-12 76.3 133 40.6
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 3.7e-12 75.5 83 50.6
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.7e-12 75.5 122 43.4
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 4.9e-12 75.1 77 50.6
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 4.9e-12 75.1 116 43.1
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 4.9e-12 75.1 51 68.6
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 4.9e-12 75.1 91 48.4
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 1.1e-11 73.9 88 50.0
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 1.1e-11 73.9 123 40.7
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 1.4e-11 73.6 126 39.7
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 1.8e-11 73.2 61 57.4
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 1.8e-11 73.2 126 40.5
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 2.4e-11 72.8 80 52.5
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 2.4e-11 72.8 51 64.7
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 2.4e-11 72.8 122 41.0
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 3.1e-11 72.4 123 38.2
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 3.1e-11 72.4 73 53.4
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 3.1e-11 72.4 77 49.4
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 5.4e-11 71.6 75 52.0
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 5.4e-11 71.6 97 43.3
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 7.0e-11 71.2 127 38.6
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 7.0e-11 71.2 122 39.3
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 7.0e-11 71.2 75 52.0
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 1.6e-10 70.1 118 39.0
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 2.7e-10 69.3 123 43.1
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 4.5e-10 68.6 86 46.5
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 4.5e-10 68.6 49 63.3
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 4.5e-10 68.6 52 59.6
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 5.9e-10 68.2 95 44.2
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 5.9e-10 68.2 83 47.0
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 5.9e-10 68.2 65 52.3
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 7.8e-10 67.8 48 64.6
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 1.0e-09 67.4 51 66.7
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 1.0e-09 67.4 51 66.7
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 1.3e-09 67.0 99 45.5
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 2.3e-09 66.2 51 56.9
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 2.3e-09 66.2 50 60.0
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.3e-09 66.2 101 42.6
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 2.9e-09 65.9 103 39.8
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.9e-09 65.9 52 57.7
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 5.0e-09 65.1 118 38.1
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 6.6e-09 64.7 51 54.9
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 6.6e-09 64.7 88 40.9
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 6.6e-09 64.7 88 40.9
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 6.6e-09 64.7 54 53.7
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 8.6e-09 64.3 88 42.0
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 8.6e-09 64.3 60 53.3
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 8.6e-09 64.3 51 52.9
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 1.1e-08 63.9 66 50.0
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 1.1e-08 63.9 103 37.9
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.5e-08 63.5 121 38.8
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.5e-08 63.5 88 39.8
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 1.9e-08 63.2 51 52.9
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 1.9e-08 63.2 51 52.9
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 1.9e-08 63.2 50 58.0
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 1.9e-08 63.2 62 50.0
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 1.9e-08 63.2 66 51.5
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 2.5e-08 62.8 50 60.0
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 4.3e-08 62.0 51 58.8
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 4.3e-08 62.0 60 51.7
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 4.3e-08 62.0 129 34.1
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 5.6e-08 61.6 77 40.3
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 7.3e-08 61.2 51 58.8
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 7.3e-08 61.2 54 51.9
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 1.8e-06 56.6 86 40.7


User provided reference genes

Program Settings