Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.9e-167 592.4 302 100.0
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.1e-162 576.6 302 96.4
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.2e-137 493.4 299 84.3
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.4e-133 479.9 299 82.6
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 2.4e-133 479.2 288 86.5
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.1e-133 478.4 305 84.9
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 4.2e-130 468.4 299 81.9
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 6.1e-129 464.5 299 81.3
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 6.1e-129 464.5 299 81.3
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 3.0e-128 462.2 299 80.9
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-127 460.3 299 80.9
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 6.3e-126 454.5 300 80.3
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 6.3e-126 454.5 300 80.3
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 4.1e-125 451.8 299 79.9
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 4.1e-125 451.8 299 79.9
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.2e-124 450.3 299 79.6
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 6.7e-120 434.5 281 80.4
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 9.7e-119 430.6 303 74.6
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.2e-118 429.5 293 77.8
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.8e-118 429.1 303 76.2
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 9.4e-114 414.1 291 77.7
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 2.1e-113 412.9 291 77.0
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 2.1e-113 412.9 301 72.4
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.8e-112 409.8 291 77.0
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-112 409.8 291 77.0
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 9.7e-111 404.1 291 75.9
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.7e-110 403.3 291 75.9
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 3.8e-107 392.1 312 69.2
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 5.0e-99 365.2 280 70.4
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 6.5e-99 364.8 275 69.5
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 5.5e-98 361.7 254 72.8
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 9.4e-98 360.9 259 71.4
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 9.4e-98 360.9 227 78.0
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 8.0e-97 357.8 215 79.5
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 8.0e-97 357.8 220 80.5
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 1.4e-96 357.1 293 67.2
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 1.8e-96 356.7 237 76.4
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.3e-96 356.3 216 81.0
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 4.0e-96 355.5 214 80.8
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 6.8e-96 354.8 259 71.4
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 8.8e-96 354.4 216 81.0
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.8e-96 354.4 216 81.0
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 1.5e-95 353.6 243 72.4
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 3.4e-95 352.4 234 75.6
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 5.7e-95 351.7 216 78.7
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 1.3e-94 350.5 264 68.6
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 3.7e-94 349.0 221 78.3
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 8.3e-94 347.8 224 76.8
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 8.3e-94 347.8 228 76.3
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 8.3e-94 347.8 210 80.5
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.1e-93 347.4 262 69.5
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 2.4e-93 346.3 232 73.7
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 9.1e-93 344.4 236 72.5
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 9.1e-93 344.4 267 66.3
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.2e-92 344.0 216 77.8
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.6e-92 343.6 255 69.8
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.7e-92 342.8 240 72.9
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.7e-92 342.8 238 73.5
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 5.9e-92 341.7 248 68.1
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.0e-91 340.9 250 69.2
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.0e-91 340.9 236 72.0
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.3e-91 340.5 241 72.2
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.3e-91 340.5 215 78.6
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.7e-91 340.1 236 73.3
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 6.5e-91 338.2 212 78.3
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 8.5e-91 337.8 264 67.4
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.5e-90 336.3 283 64.0
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 3.2e-90 335.9 243 68.3
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 3.2e-90 335.9 243 68.3
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.2e-90 335.9 215 78.6
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 5.5e-90 335.1 286 63.3
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 5.5e-90 335.1 243 68.7
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 5.5e-90 335.1 235 72.8
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 7.2e-90 334.7 243 68.3
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 7.2e-90 334.7 243 68.3
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 7.2e-90 334.7 243 68.3
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 1.2e-89 334.0 290 61.4
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.6e-89 333.6 272 64.3
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 2.1e-89 333.2 252 68.3
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 2.1e-89 333.2 254 69.7
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.7e-89 332.8 218 76.6
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.7e-89 332.8 218 76.6
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 2.7e-89 332.8 264 65.5
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.7e-89 332.8 235 72.3
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 2.7e-89 332.8 216 76.4
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 6.1e-89 331.6 242 69.4
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 8.0e-89 331.3 230 73.0
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.4e-88 330.5 215 74.9
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.8e-88 330.1 279 64.2
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 4.0e-88 328.9 260 66.2
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 4.0e-88 328.9 275 66.2
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 5.2e-88 328.6 219 73.5
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.0e-87 326.6 271 64.2
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 3.4e-87 325.9 225 73.3
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 4.4e-87 325.5 260 64.6
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 5.7e-87 325.1 219 74.0
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 5.7e-87 325.1 235 71.5
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 1.3e-86 323.9 214 74.3
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.2e-86 323.2 254 66.1
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.2e-86 323.2 260 65.8
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 2.8e-86 322.8 254 66.1
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 2.8e-86 322.8 277 62.5
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.7e-86 322.4 271 63.1
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 6.3e-86 321.6 274 65.3
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 6.3e-86 321.6 210 75.7
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 6.3e-86 321.6 274 63.5
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 8.3e-86 321.2 271 63.1
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.1e-85 320.9 277 62.1
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.4e-85 319.7 222 72.1
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 3.1e-85 319.3 237 69.6
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 4.1e-85 318.9 253 67.2
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.2e-84 317.4 210 73.8
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 2.0e-84 316.6 215 73.5
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.5e-84 315.5 209 74.6
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 7.7e-84 314.7 205 75.1
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.0e-83 314.3 222 73.0
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.7e-83 313.5 234 69.7
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 4.2e-82 308.9 228 69.7
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 7.2e-82 308.1 215 72.6
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 7.2e-82 308.1 264 63.3
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.2e-81 307.4 247 64.4
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.6e-81 307.0 219 70.8
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 2.1e-81 306.6 230 67.0
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 8.0e-81 304.7 206 72.8
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.8e-80 303.5 253 64.8
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 2.3e-80 303.1 270 63.0
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 2.3e-80 303.1 256 62.5
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 4.0e-80 302.4 233 65.2
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 8.9e-80 301.2 214 70.6
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.5e-79 300.4 253 64.4
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 3.4e-79 299.3 233 66.5
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.2e-78 296.6 203 73.4
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.8e-77 293.5 211 69.2
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 3.2e-77 292.7 171 82.5
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 5.4e-77 292.0 249 60.6
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.0e-76 290.0 226 65.9
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.9e-75 286.2 222 65.3
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 2.9e-75 286.2 278 56.1
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.1e-73 280.0 244 62.7
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 2.8e-73 279.6 177 78.5
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 4.0e-72 275.8 179 77.7
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 7.5e-71 271.6 223 64.1
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.1e-64 251.1 215 60.5
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 2.2e-62 243.4 226 59.7
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 8.3e-62 241.5 206 58.7
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 7.8e-60 235.0 220 58.6
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 7.8e-60 235.0 266 50.4
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.3e-59 234.2 269 53.2
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 4.3e-58 229.2 143 79.7
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 1.2e-57 227.6 143 79.0
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 3.1e-56 223.0 210 57.1
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 7.6e-55 218.4 133 81.2
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 3.3e-50 203.0 215 49.3
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 3.4e-47 193.0 210 51.0
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.1e-41 173.7 169 52.1
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 4.2e-37 159.5 184 48.9
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 9.3e-37 158.3 173 53.8
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.4e-26 122.1 76 82.9
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 6.9e-24 115.5 80 66.2
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.3e-17 92.4 65 63.1
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 6.5e-14 82.4 89 48.3
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 1.5e-10 71.2 75 52.0
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 1.9e-10 70.9 65 55.4
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 2.5e-10 70.5 76 57.9
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 1.3e-09 68.2 97 40.2
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 2.2e-09 67.4 44 72.7
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.5e-07 61.2 40 72.5


User provided reference genes

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