Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 7.8e-55 216.9 107 100.0
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 1.5e-53 212.6 107 96.3
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 5.8e-50 200.7 107 89.7
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 9.9e-50 199.9 105 92.4
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.7e-49 199.1 107 90.7
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 5.4e-48 194.1 107 87.9
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 5.4e-48 194.1 107 87.9
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 2.1e-47 192.2 107 86.9
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 2.1e-47 192.2 107 86.9
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 2.1e-47 192.2 107 86.9
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 4.6e-47 191.0 105 88.6
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 5.6e-45 184.1 104 85.6
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 1.1e-40 169.9 107 80.4
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 1.1e-40 169.9 107 80.4
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 9.2e-40 166.8 107 79.4
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 1.7e-38 162.5 104 77.9
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 2.4e-35 152.1 114 65.8
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 9.0e-35 150.2 108 65.7
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 7.6e-34 147.1 105 68.6
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 9.9e-34 146.7 104 69.2
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 1.3e-33 146.4 107 70.1
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 3.5e-31 138.3 111 62.2
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 5.6e-29 131.0 104 63.5
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 5.6e-29 131.0 104 63.5
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 1.3e-28 129.8 109 63.3
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 8.1e-28 127.1 104 63.5
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 8.1e-28 127.1 104 63.5
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 8.1e-28 127.1 104 63.5
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 8.1e-28 127.1 100 62.0
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 5.3e-19 97.8 71 66.2
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 9.0e-19 97.1 71 64.8
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 2.0e-18 95.9 106 48.1
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 2.0e-18 95.9 71 62.0
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 2.6e-18 95.5 96 54.2
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 3.4e-18 95.1 71 64.8
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 7.6e-18 94.0 66 65.2
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 7.6e-18 94.0 71 64.8
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 7.6e-18 94.0 71 64.8
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 7.6e-18 94.0 87 51.7
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 7.6e-18 94.0 115 44.3
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 1.3e-17 93.2 97 48.5
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 2.2e-17 92.4 71 63.4
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 2.9e-17 92.0 71 62.0
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 6.4e-17 90.9 71 62.0
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 1.4e-16 89.7 107 44.9
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 4.2e-16 88.2 101 50.5
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 4.2e-16 88.2 105 47.6
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 5.5e-16 87.8 101 50.5
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 7.1e-16 87.4 86 55.8
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 7.1e-16 87.4 102 50.0
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 9.3e-16 87.0 69 55.1
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 9.3e-16 87.0 71 59.2
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 1.6e-15 86.3 89 51.7
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.6e-15 86.3 105 46.7
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.6e-15 86.3 105 46.7
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 4.6e-15 84.7 89 51.7
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 2.3e-14 82.4 103 44.7
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.9e-14 81.6 103 43.7
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 5.1e-14 81.3 105 42.9
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 6.7e-14 80.9 99 46.5
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 1.9e-13 79.3 103 43.7
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.9e-13 79.3 103 43.7
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.9e-13 79.3 103 43.7
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 4.3e-13 78.2 103 42.7
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 1.6e-12 76.3 89 51.7
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 3.1e-11 72.0 83 49.4
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 3.4e-10 68.6 77 53.2
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 3.4e-10 68.6 67 50.7
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 4.5e-10 68.2 67 50.7
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 2.2e-09 65.9 89 43.8
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 3.8e-09 65.1 100 47.0
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 8.4e-09 63.9 89 44.9
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 1.1e-08 63.5 47 61.7
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 4.2e-08 61.6 77 40.3
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 5.5e-08 61.2 108 37.0
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 1.2e-07 60.1 55 56.4
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 2.1e-07 59.3 71 52.1
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 2.7e-07 58.9 59 52.5
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 3.5e-07 58.5 45 57.8
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 3.5e-07 58.5 35 77.1
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 3.5e-07 58.5 45 55.6
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 7.9e-07 57.4 39 64.1
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 7.9e-07 57.4 52 55.8
MBI02_g19254_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 7.9e-07 57.4 63 49.2
PGR031G0494 Punica granatum HOM05D007708 ORTHO05D009506 7.9e-07 57.4 66 50.0
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 1.0e-06 57.0 121 38.8
Nitab4.5_0001610g0030 Nicotiana tabacum HOM05D007708 ORTHO05D009506 1.3e-06 56.6 75 38.7
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 1.3e-06 56.6 35 74.3


User provided reference genes

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