Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 8.7e-54 213.4 108 100.0
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.0e-46 189.9 108 90.7
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 1.3e-46 189.5 108 91.7
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 4.2e-40 167.9 108 78.7
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 1.2e-39 166.4 107 82.2
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 1.3e-38 162.9 107 77.6
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 5.1e-38 161.0 107 77.6
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 1.5e-37 159.5 104 78.8
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 1.9e-37 159.1 105 76.2
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 2.5e-37 158.7 105 76.2
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 3.7e-36 154.8 108 76.9
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 1.4e-35 152.9 100 79.0
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 5.3e-35 151.0 105 74.3
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 4.5e-34 147.9 105 73.3
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 1.3e-33 146.4 108 75.0
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 1.0e-30 136.7 98 73.5
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 6.5e-25 117.5 80 80.0
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 2.5e-24 115.5 124 54.0
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 3.2e-24 115.2 123 51.2
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 2.1e-23 112.5 70 77.1
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.1e-23 112.5 116 55.2
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 2.1e-23 112.5 125 50.4
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 6.1e-23 110.9 111 55.9
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.0e-22 110.2 109 52.3
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.4e-22 109.8 115 50.4
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 1.8e-22 109.4 123 51.2
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 2.3e-22 109.0 123 49.6
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 3.9e-22 108.2 109 54.1
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 6.7e-22 107.5 113 54.0
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 6.7e-22 107.5 113 52.2
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 1.5e-21 106.3 109 49.5
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 1.5e-21 106.3 109 49.5
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 2.0e-21 105.9 123 49.6
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 2.0e-21 105.9 111 51.4
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 2.6e-21 105.5 116 50.0
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.6e-21 105.5 124 49.2
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.6e-21 105.5 124 49.2
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.6e-21 105.5 124 49.2
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.6e-21 105.5 124 49.2
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.6e-21 105.5 124 49.2
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.7e-21 104.4 124 49.2
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 7.4e-21 104.0 112 53.6
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.4e-21 104.0 124 48.4
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.4e-21 104.0 124 48.4
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 7.4e-21 104.0 109 51.4
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 9.7e-21 103.6 115 52.2
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 9.7e-21 103.6 116 51.7
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 1.3e-20 103.2 122 46.7
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.3e-20 103.2 91 58.2
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-20 102.8 124 48.4
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 1.7e-20 102.8 111 53.2
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 2.2e-20 102.4 121 48.8
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 2.2e-20 102.4 110 50.0
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 2.2e-20 102.4 125 48.0
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.2e-20 102.4 124 48.4
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 2.2e-20 102.4 125 48.0
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 2.8e-20 102.1 97 54.6
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 2.8e-20 102.1 118 50.8
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 3.7e-20 101.7 118 50.8
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 4.8e-20 101.3 111 52.3
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 6.3e-20 100.9 119 46.2
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 1.1e-19 100.1 123 44.7
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.1e-19 100.1 118 50.0
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.4e-19 99.8 111 49.5
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 1.4e-19 99.8 109 49.5
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 1.4e-19 99.8 114 50.9
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 1.8e-19 99.4 109 50.5
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.8e-19 99.4 108 53.7
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 1.8e-19 99.4 120 48.3
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 2.4e-19 99.0 74 75.7
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 2.4e-19 99.0 111 50.5
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.1e-19 98.6 131 46.6
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 3.1e-19 98.6 109 47.7
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 4.1e-19 98.2 122 45.9
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 4.1e-19 98.2 108 52.8
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.9e-19 97.4 124 48.4
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 6.9e-19 97.4 109 48.6
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 9.1e-19 97.1 110 50.0
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.2e-18 96.7 119 46.2
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 1.2e-18 96.7 74 74.3
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.5e-18 96.3 123 45.5
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 1.5e-18 96.3 131 46.6
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 1.5e-18 96.3 111 47.7
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 1.5e-18 96.3 110 49.1
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 2.0e-18 95.9 109 45.9
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.6e-18 95.5 124 47.6
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 3.4e-18 95.1 109 45.9
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 4.5e-18 94.7 107 48.6
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.9e-18 94.4 124 47.6
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 7.7e-18 94.0 122 45.9
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 1.3e-17 93.2 113 47.8
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 1.3e-17 93.2 110 48.2
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 1.3e-17 93.2 106 46.2
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 2.9e-17 92.0 121 48.8
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.9e-17 92.0 116 46.6
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.8e-17 91.7 124 44.4
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 3.8e-17 91.7 109 44.0
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 5.0e-17 91.3 139 38.8
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 5.0e-17 91.3 129 44.2
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 8.5e-17 90.5 109 44.0
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.4e-16 89.7 109 45.9
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.4e-16 89.7 102 48.0
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 1.9e-16 89.4 113 43.4
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.4e-16 87.0 87 52.9
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.6e-15 86.3 131 42.0
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 3.6e-15 85.1 110 46.4
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 6.1e-15 84.3 61 63.9
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 5.2e-14 81.3 106 45.3
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 8.8e-14 80.5 89 55.1
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 1.5e-13 79.7 97 44.3
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.5e-13 79.7 104 44.2
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 2.6e-13 79.0 99 43.4
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 7.4e-13 77.4 60 61.7
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 2.8e-12 75.5 60 58.3
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 4.8e-12 74.7 62 51.6
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 3.1e-11 72.0 123 34.1
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 1.2e-10 70.1 107 41.1
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 2.0e-10 69.3 107 40.2
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 2.6e-10 68.9 82 48.8
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 3.5e-10 68.6 83 48.2
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 1.0e-09 67.0 44 70.5
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 1.0e-09 67.0 107 40.2
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.2e-09 65.9 93 45.2
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 6.5e-09 64.3 45 66.7
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 8.5e-09 63.9 45 66.7
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.1e-08 63.5 84 45.2
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 1.1e-08 63.5 109 35.8
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.7e-07 58.2 93 44.1
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 4.7e-07 58.2 46 56.5
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 4.0e-06 55.1 45 60.0
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 6.7e-06 54.3 48 47.9


User provided reference genes

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