Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 5.0e-70 267.7 138 100.0
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.1e-66 256.5 137 95.6
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 8.2e-65 250.4 135 95.6
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 8.2e-65 250.4 135 94.1
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 1.8e-64 249.2 135 93.3
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 1.0e-59 233.4 137 83.9
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 2.3e-59 232.3 137 83.2
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 3.0e-59 231.9 137 82.5
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 3.0e-59 231.9 137 82.5
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 2.0e-58 229.2 129 88.4
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 4.4e-58 228.0 137 82.5
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 3.7e-57 224.9 137 79.6
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 3.7e-57 224.9 137 79.6
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 3.5e-55 218.4 138 81.9
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.5e-55 218.4 138 78.3
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 2.9e-54 215.3 137 78.1
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.8e-54 214.9 138 79.7
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.9e-53 212.6 138 78.3
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.2e-53 211.5 138 76.1
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.0e-52 207.2 138 75.4
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 1.1e-50 203.4 137 71.5
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 5.7e-50 201.1 136 72.1
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 5.7e-50 201.1 135 72.6
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 5.7e-50 201.1 137 71.5
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 1.7e-49 199.5 136 71.3
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.7e-49 198.4 137 73.0
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 3.7e-49 198.4 138 71.0
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 4.8e-49 198.0 136 70.6
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 4.8e-49 198.0 136 70.6
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 4.8e-49 198.0 136 70.6
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 6.3e-49 197.6 139 69.8
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 6.3e-49 197.6 139 69.8
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 8.2e-49 197.2 136 72.1
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 8.2e-49 197.2 136 69.9
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 1.4e-48 196.4 137 69.3
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.4e-48 196.4 137 70.1
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 1.4e-48 196.4 137 68.6
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.4e-48 196.4 139 69.1
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.4e-48 195.7 138 70.3
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 2.4e-48 195.7 136 70.6
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.1e-48 195.3 137 71.5
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 3.1e-48 195.3 136 68.4
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 4.1e-48 194.9 137 70.1
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 7.0e-48 194.1 136 68.4
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 7.0e-48 194.1 137 67.9
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 7.0e-48 194.1 137 67.9
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 7.0e-48 194.1 137 67.9
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 7.0e-48 194.1 137 67.9
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 7.0e-48 194.1 137 67.9
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 9.1e-48 193.7 136 69.9
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 9.1e-48 193.7 137 66.4
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.2e-47 193.4 138 69.6
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.6e-47 193.0 137 65.7
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 1.6e-47 193.0 137 65.0
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.0e-47 192.6 137 68.6
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 2.6e-47 192.2 137 67.2
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 4.5e-47 191.4 135 68.1
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 5.9e-47 191.0 137 68.6
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 5.9e-47 191.0 137 67.2
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 7.7e-47 190.7 137 67.2
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 7.7e-47 190.7 136 67.6
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.0e-46 190.3 137 67.9
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.7e-46 189.5 137 64.2
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.7e-46 189.5 137 66.4
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.7e-46 189.5 137 67.2
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 2.2e-46 189.1 138 65.9
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 2.9e-46 188.7 126 73.0
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 2.9e-46 188.7 137 65.7
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 5.0e-46 188.0 136 66.2
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 5.0e-46 188.0 135 67.4
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 6.5e-46 187.6 137 66.4
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.1e-45 186.8 137 65.7
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.1e-45 186.8 137 65.7
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 3.2e-45 185.3 137 68.6
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 5.5e-45 184.5 135 66.7
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 7.2e-45 184.1 137 65.0
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 7.2e-45 184.1 137 65.0
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 9.4e-45 183.7 137 64.2
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 1.2e-44 183.3 137 65.7
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 1.6e-44 183.0 133 68.4
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 1.6e-44 183.0 140 65.7
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 1.6e-44 183.0 137 67.2
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.6e-44 183.0 137 63.5
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 1.6e-44 183.0 137 66.4
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 2.1e-44 182.6 137 62.0
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 2.7e-44 182.2 131 67.9
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 3.6e-44 181.8 136 62.5
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 6.1e-44 181.0 136 63.2
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 6.1e-44 181.0 136 66.9
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 6.1e-44 181.0 137 63.5
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 8.0e-44 180.6 137 64.2
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.4e-43 179.9 163 58.3
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 3.0e-43 178.7 136 63.2
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 3.0e-43 178.7 137 63.5
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 3.0e-43 178.7 136 66.2
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 4.0e-43 178.3 137 60.6
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 5.2e-43 177.9 136 66.2
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.2e-42 176.8 129 65.9
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.5e-42 176.4 125 67.2
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 2.0e-42 176.0 136 61.8
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 2.0e-42 176.0 120 71.7
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 5.7e-42 174.5 159 56.6
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 9.8e-42 173.7 134 61.9
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 3.7e-41 171.8 174 52.9
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 4.8e-41 171.4 130 63.8
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 6.3e-41 171.0 125 62.4
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 8.3e-41 170.6 137 60.6
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 2.4e-40 169.1 119 68.9
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 4.1e-40 168.3 135 58.5
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.2e-39 166.8 94 88.3
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.7e-38 162.9 135 59.3
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.0e-38 161.4 138 64.5
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 8.5e-38 160.6 135 58.5
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.7e-33 145.2 90 77.8
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 7.0e-32 141.0 90 74.4
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 4.5e-31 138.3 88 73.9
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 3.8e-30 135.2 88 72.7
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 5.0e-30 134.8 97 73.2
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 5.0e-30 134.8 97 73.2
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 5.0e-30 134.8 97 73.2
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 5.0e-30 134.8 89 71.9
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 6.6e-30 134.4 94 66.0
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.5e-29 133.3 71 91.5
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.8e-28 129.0 120 53.3
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 4.7e-28 128.3 88 69.3
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 6.1e-28 127.9 88 69.3
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 2.3e-27 125.9 109 60.6
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.5e-26 123.2 136 55.1
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 5.7e-26 121.3 136 44.9
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 3.7e-25 118.6 88 67.0
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.8e-24 116.3 134 50.0
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 3.2e-24 115.5 135 44.4
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 4.1e-24 115.2 136 44.1
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 5.4e-24 114.8 95 57.9
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.6e-23 113.2 135 45.2
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 2.7e-23 112.5 91 54.9
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.5e-21 106.7 100 52.0
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.3e-21 105.1 71 77.5
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 7.3e-21 104.4 72 68.1
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.4e-19 100.1 71 66.2
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 7.5e-18 94.4 137 42.3
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.3e-17 93.6 52 94.2
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 1.4e-16 90.1 81 60.5
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 1.5e-13 80.1 56 69.6
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 5.6e-13 78.2 52 61.5
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.6e-12 76.6 59 62.7
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-10 69.3 67 53.7
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 3.2e-08 62.4 52 59.6
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 5.4e-08 61.6 48 64.6
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 5.4e-08 61.6 48 64.6
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 9.2e-08 60.8 57 45.6
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.9e-06 55.5 39 69.2
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 8.6e-06 54.3 46 60.9


User provided reference genes

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