Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 1.7e-188 662.5 340 100.0
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 4.9e-143 511.5 344 82.6
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 2.3e-137 492.7 344 79.4
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 2.2e-135 486.1 342 78.7
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 5.0e-132 474.9 344 77.6
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 8.6e-132 474.2 342 76.6
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 1.5e-131 473.4 344 77.3
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 1.5e-131 473.4 344 77.3
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 3.3e-131 472.2 337 77.7
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 2.1e-130 469.5 346 76.3
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 5.1e-116 421.8 343 72.6
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 5.1e-116 421.8 347 72.9
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 2.6e-112 409.5 342 71.1
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 1.1e-110 404.1 347 69.7
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 7.1e-110 401.4 310 73.5
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 1.4e-94 350.5 237 83.1
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 3.1e-89 332.8 345 60.9
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 3.0e-76 289.7 242 71.9
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 4.8e-58 229.2 352 47.4
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 7.7e-48 195.3 401 41.6
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 7.7e-48 195.3 388 41.2
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 1.3e-47 194.5 395 40.8
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 2.5e-46 190.3 393 41.0
THA.LOC104798755 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 4.2e-46 189.5 346 42.2
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 1.6e-45 187.6 395 40.3
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 3.6e-45 186.4 393 40.7
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 1.0e-44 184.9 404 40.6
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 6.8e-44 182.2 396 40.4
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 6.8e-44 182.2 392 40.6
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 6.8e-44 182.2 396 40.4
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 8.8e-44 181.8 389 39.6
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 2.8e-42 176.8 394 39.6
C06p14570 Brassica napus HOM05D008621 ORTHO05D010242 4.8e-42 176.0 396 39.1
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 8.3e-42 175.3 394 39.3
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 1.1e-41 174.9 397 38.8
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 5.0e-39 166.0 397 38.8
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 1.7e-34 151.0 292 43.2
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 2.9e-26 123.6 353 36.0
Aa31LG10G1950 Aethionema arabicum HOM05D008621 ORTHO05D010242 3.7e-26 123.2 439 31.9
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 3.7e-26 123.2 353 33.1
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 4.9e-26 122.9 362 32.3
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 7.8e-24 115.5 347 32.0
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 3.1e-20 103.6 358 30.7
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 8.9e-20 102.1 360 31.7
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 1.2e-19 101.7 360 34.2
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 5.8e-19 99.4 353 32.6
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 9.8e-19 98.6 360 31.7
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 1.7e-18 97.8 354 28.8
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 1.7e-18 97.8 356 31.7
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 6.4e-18 95.9 356 31.7
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 8.3e-18 95.5 361 30.7
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 1.4e-17 94.7 343 32.4
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 1.9e-17 94.4 349 28.9
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 3.2e-17 93.6 353 32.3
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 4.1e-17 93.2 352 31.2
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 4.1e-17 93.2 341 32.0
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 7.8e-16 89.0 352 31.2
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 1.0e-15 88.6 347 30.0
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 1.9e-14 84.3 347 30.5
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 7.3e-14 82.4 360 29.2
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 2.1e-13 80.9 358 29.6
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 4.7e-13 79.7 360 27.8
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 8.1e-13 79.0 360 30.8
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 1.4e-12 78.2 331 27.8
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 1.8e-12 77.8 357 28.3
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 3.1e-12 77.0 326 29.8
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 8.9e-12 75.5 138 42.8
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 1.5e-11 74.7 361 29.6
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 2.6e-11 73.9 357 27.2
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 2.6e-11 73.9 366 27.0
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 5.8e-11 72.8 361 29.1
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 9.8e-11 72.0 349 29.5
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 1.3e-10 71.6 396 29.0
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 2.2e-10 70.9 356 27.0
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 3.7e-10 70.1 346 28.3
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 3.2e-09 67.0 365 29.3
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 4.1e-09 66.6 353 28.9
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 4.1e-09 66.6 368 27.7
Lsat_1_v5_gn_5_127461 Lactuca sativa HOM05D016023 ORTHO05D010242 7.1e-09 65.9 326 28.2
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 9.2e-09 65.5 344 27.3
HanXRQChr10g0302501 Helianthus annuus HOM05D016023 ORTHO05D010242 1.6e-08 64.7 338 28.7
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 1.6e-08 64.7 339 28.6
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 2.1e-08 64.3 210 29.5
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 3.5e-08 63.5 350 28.9
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 6.0e-08 62.8 401 29.7
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 6.0e-08 62.8 362 29.0
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 6.0e-08 62.8 342 26.9
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.0e-07 62.0 360 28.3
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 1.0e-07 62.0 196 31.1
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 1.7e-07 61.2 212 31.1
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 3.0e-07 60.5 351 25.9
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 6.6e-07 59.3 136 38.2
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 8.6e-07 58.9 234 29.1
CiPaw.11G166600 Carya illinoinensis HOM05D001501 ORTHO05D001329 1.1e-06 58.5 131 35.1
CsaV3_3G019560 Cucumis sativus L. HOM05D001501 ORTHO05D001329 1.5e-06 58.2 237 31.6
PGSC0003DMG400012438 Solanum tuberosum HOM05D010484 ORTHO05D010242 1.5e-06 58.2 403 25.8
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 1.9e-06 57.8 201 33.3
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 1.9e-06 57.8 355 27.0
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 2.5e-06 57.4 340 28.8
PGR031G3944 Punica granatum HOM05D001501 ORTHO05D001329 2.5e-06 57.4 378 25.9
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 3.3e-06 57.0 229 29.7
Lsat_1_v5_gn_9_98300 Lactuca sativa HOM05D016023 ORTHO05D010242 7.3e-06 55.8 210 30.0


User provided reference genes

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