Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 8.5e-135 483.8 267 100.0
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 1.4e-121 439.9 263 93.9
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 2.3e-111 406.0 274 84.3
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 1.4e-105 386.7 284 79.6
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 8.1e-101 370.9 283 78.1
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 7.5e-99 364.4 281 74.0
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 3.7e-98 362.1 281 73.7
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 3.7e-98 362.1 281 73.7
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 8.3e-98 360.9 281 73.3
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 5.4e-97 358.2 281 73.3
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.4e-89 333.6 281 72.2
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 1.3e-74 283.9 278 62.2
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 5.1e-63 245.4 232 63.8
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 4.3e-62 242.3 267 55.8
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 2.1e-61 240.0 276 55.1
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.8e-61 239.6 278 56.5
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.8e-61 239.6 247 60.3
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 4.8e-61 238.8 276 56.9
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.1e-60 237.7 272 55.5
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 1.4e-60 237.3 287 53.0
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 1.8e-60 236.9 213 64.8
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 1.8e-60 236.9 264 56.1
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 5.3e-60 235.3 273 56.0
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 6.9e-60 235.0 268 57.1
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.5e-59 233.8 271 57.2
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 2.6e-59 233.0 216 62.0
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 3.4e-59 232.6 257 55.3
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 4.5e-59 232.3 270 56.3
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 4.5e-59 232.3 263 54.8
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 4.5e-59 232.3 220 63.2
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 4.5e-59 232.3 189 68.3
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 5.8e-59 231.9 267 57.3
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 7.6e-59 231.5 256 58.2
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.3e-58 230.7 269 55.4
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 1.3e-58 230.7 270 57.0
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 4.9e-58 228.8 285 53.0
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 1.1e-57 227.6 219 62.6
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.4e-57 227.3 269 55.0
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.4e-57 227.3 221 61.5
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 1.4e-57 227.3 284 54.2
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 1.9e-57 226.9 290 54.1
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 2.5e-57 226.5 266 57.1
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 3.2e-57 226.1 285 51.2
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 3.2e-57 226.1 263 56.3
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 3.2e-57 226.1 281 52.3
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 4.2e-57 225.7 245 60.4
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 4.2e-57 225.7 219 61.6
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 7.1e-57 224.9 221 61.1
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 7.1e-57 224.9 246 58.9
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 9.3e-57 224.6 205 61.0
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 2.1e-56 223.4 214 63.6
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 2.7e-56 223.0 224 58.5
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 4.6e-56 222.2 223 61.0
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 6.0e-56 221.9 214 60.3
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 1.0e-55 221.1 222 58.6
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 1.0e-55 221.1 286 54.2
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 1.8e-55 220.3 283 51.2
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 1.8e-55 220.3 258 55.8
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 1.8e-55 220.3 218 60.6
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 3.0e-55 219.5 261 53.6
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 3.9e-55 219.2 218 62.4
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 5.1e-55 218.8 234 56.8
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 1.1e-54 217.6 281 50.9
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 1.1e-54 217.6 272 54.0
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 1.5e-54 217.2 256 54.3
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 2.5e-54 216.5 283 50.2
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 4.3e-54 215.7 284 51.1
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 5.7e-54 215.3 216 63.9
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 5.7e-54 215.3 209 61.2
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 9.6e-54 214.5 220 59.1
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 9.6e-54 214.5 233 57.5
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.8e-53 212.2 220 58.2
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 6.3e-53 211.8 209 60.3
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 1.1e-52 211.1 271 49.4
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.4e-52 210.7 273 50.9
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.4e-52 210.7 273 50.9
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 6.9e-52 208.4 282 48.2
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 3.4e-51 206.1 230 53.5
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 3.8e-50 202.6 249 53.4
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 3.8e-50 202.6 300 46.3
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 1.1e-49 201.1 242 53.3
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 1.9e-49 200.3 249 51.8
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 1.9e-49 200.3 249 51.8
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.5e-49 198.7 218 56.4
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 6.1e-48 195.3 235 51.5
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 1.8e-47 193.7 250 49.2
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 8.7e-47 191.4 220 54.1
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 4.3e-46 189.1 234 51.3
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 1.1e-44 184.5 204 57.4
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.1e-44 184.5 218 53.7
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.4e-44 183.3 212 53.8
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 4.1e-44 182.6 173 63.6
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 4.1e-44 182.6 173 63.6
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 5.3e-44 182.2 212 53.3
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 6.9e-44 181.8 194 59.3
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 5.9e-43 178.7 202 56.9
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 6.1e-40 168.7 213 51.2
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.0e-39 167.9 146 65.8
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 1.4e-39 167.5 201 53.2
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 8.8e-39 164.9 192 52.1
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 1.7e-37 160.6 139 66.9
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 3.7e-37 159.5 155 61.3
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 1.1e-36 157.9 191 50.3
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 3.4e-35 152.9 212 49.5
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 7.7e-35 151.8 244 43.9
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 5.0e-34 149.1 214 52.3
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 1.1e-33 147.9 203 46.3
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 2.5e-33 146.7 190 52.1
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 5.1e-31 139.0 192 47.9
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 1.1e-30 137.9 223 44.4
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 1.1e-30 137.9 270 40.7
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 1.5e-30 137.5 102 71.6
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 5.7e-30 135.6 269 40.1
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 2.4e-28 130.2 75 92.0
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 4.1e-28 129.4 171 48.0
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 7.0e-28 128.6 140 54.3
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 9.1e-28 128.3 249 37.8
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 7.7e-27 125.2 136 58.8
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 3.6e-24 116.3 238 40.8
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 1.8e-23 114.0 229 40.6
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 4.0e-23 112.8 138 55.1
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 1.5e-22 110.9 154 46.8
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 2.4e-20 103.6 123 50.4
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 5.3e-20 102.4 163 43.6
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 5.3e-20 102.4 180 42.2
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 2.2e-18 97.1 69 84.1
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 1.1e-17 94.7 218 38.1
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 8.8e-15 85.1 72 65.3
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 2.6e-14 83.6 182 37.4
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 1.6e-11 74.3 120 50.0
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 3.5e-11 73.2 138 37.7
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 4.7e-08 62.8 194 27.8
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 1.8e-07 60.8 61 55.7
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.5e-06 57.8 43 69.8
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 2.0e-06 57.4 47 61.7


User provided reference genes

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