Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G14190 Arabidopsis thaliana HOM05D007739 ORTHO05D009838 1.1e-107 393.3 194 100.0
AL3G26440 Arabidopsis lyrata HOM05D007739 ORTHO05D009838 1.6e-95 352.8 196 91.8
A03p38660 Brassica napus HOM05D007739 ORTHO05D009838 2.7e-82 308.9 195 80.5
BraA03t13013Z Brassica rapa HOM05D007739 ORTHO05D009838 2.7e-82 308.9 195 80.5
Thhalv10021564m.g Eutrema salsugineum HOM05D007739 ORTHO05D009838 4.4e-80 301.6 199 81.9
Sp3g12450 Schrenkiella parvula HOM05D007739 ORTHO05D009838 2.8e-79 298.9 198 82.3
BcaB04g18824 Brassica carinata HOM05D007739 ORTHO05D009838 3.7e-79 298.5 199 77.4
BolC3t16943H Brassica oleracea HOM05D007739 ORTHO05D009838 1.2e-77 293.5 197 79.2
Carub.0003s1380 Capsella rubella HOM05D007739 ORTHO05D009838 1.6e-77 293.1 188 79.3
BcaC01g03953 Brassica carinata HOM05D007739 ORTHO05D009838 3.8e-76 288.5 194 78.4
C03p46780 Brassica napus HOM05D007739 ORTHO05D009838 8.5e-76 287.3 191 78.5
CARHR089070 Cardamine hirsuta HOM05D007739 ORTHO05D009838 8.5e-76 287.3 201 76.6
C01p50440 Brassica napus HOM05D007739 ORTHO05D009838 4.1e-62 241.9 199 71.4
BcaNung07312 Brassica carinata HOM05D007739 ORTHO05D009838 2.7e-61 239.2 199 69.3
BolC1t04996H Brassica oleracea HOM05D007739 ORTHO05D009838 5.0e-60 235.0 199 69.8
A01p39500 Brassica napus HOM05D007739 ORTHO05D009838 7.7e-53 211.1 196 64.3
BraA01t03991Z Brassica rapa HOM05D007739 ORTHO05D009838 5.0e-52 208.4 196 63.8
THA.LOC104815614 Tarenaya hassleriana HOM05D007739 ORTHO05D009838 6.4e-47 191.4 191 57.1
THA.LOC104815612 Tarenaya hassleriana HOM05D007739 ORTHO05D009838 7.0e-46 188.0 191 56.5
Aa31LG8G1440 Aethionema arabicum HOM05D007739 ORTHO05D009838 2.7e-37 159.5 116 70.7
Thhalv10014740m.g Eutrema salsugineum HOM05D007739 ORTHO05D009838 1.5e-32 143.7 198 46.0
Aa31LG3G14870 Aethionema arabicum HOM05D007739 ORTHO05D009838 7.5e-32 141.4 197 47.2
Sp6g31280 Schrenkiella parvula HOM05D007739 ORTHO05D009838 6.4e-31 138.3 197 45.7
AL6G23160 Arabidopsis lyrata HOM05D007739 ORTHO05D009838 1.9e-30 136.7 200 46.0
BcaC08g44770 Brassica carinata HOM05D007739 ORTHO05D009838 2.4e-30 136.3 101 67.3
C06p23400 Brassica napus HOM05D007739 ORTHO05D009838 1.2e-29 134.0 101 66.3
BolC6t37514H Brassica oleracea HOM05D007739 ORTHO05D009838 1.2e-29 134.0 101 66.3
A10p25460 Brassica napus HOM05D007739 ORTHO05D009838 1.7e-28 130.2 197 41.1
AT5G12360 Arabidopsis thaliana HOM05D007739 ORTHO05D009838 2.3e-28 129.8 199 43.2
BolC9t59287H Brassica oleracea HOM05D007739 ORTHO05D009838 3.3e-27 125.9 197 40.1
C09p64530 Brassica napus HOM05D007739 ORTHO05D009838 9.5e-27 124.4 197 39.6
BraA10t44610Z Brassica rapa HOM05D007739 ORTHO05D009838 1.4e-25 120.6 197 39.6
CARHR200750 Cardamine hirsuta HOM05D007739 ORTHO05D009838 8.4e-23 111.3 168 41.7
CiPaw.14G114800 Carya illinoinensis HOM05D007739 ORTHO05D009838 7.3e-19 98.2 203 38.9
Migut.D00651 Erythranthe guttata HOM05D007739 ORTHO05D009838 7.3e-19 98.2 209 37.8
C05p53450 Brassica napus HOM05D007739 ORTHO05D009838 1.2e-18 97.4 62 77.4
BolC5t34022H Brassica oleracea HOM05D007739 ORTHO05D009838 1.2e-18 97.4 62 77.4
CSS0046040 Camellia sinensis var. sinensis HOM05D007739 ORTHO05D009838 2.1e-18 96.7 202 38.1
Cfa009840 Carpinus fangiana HOM05D007739 ORTHO05D009838 2.1e-18 96.7 193 35.8
Dinv36186 Davidia involucrata HOM05D002367 ORTHO05D002566 3.6e-18 95.9 187 35.8
Nitab4.5_0001095g0030 Nicotiana tabacum HOM05D007739 ORTHO05D009838 4.7e-18 95.5 200 35.0
Peaxi162Scf00469g00320 Petunia axillaris HOM05D007739 ORTHO05D009838 6.2e-18 95.1 192 35.4
DCAR_002115 Daucus carota HOM05D007739 ORTHO05D009838 1.1e-17 94.4 203 32.5
A05p35270 Brassica napus HOM05D007739 ORTHO05D009838 4.0e-17 92.4 61 75.4
PGR119G1777 Punica granatum HOM05D007739 ORTHO05D009838 5.2e-17 92.0 200 35.5
Glyma.14G034000 Glycine max HOM05D007739 ORTHO05D009838 1.5e-16 90.5 201 35.3
Lsat_1_v5_gn_5_70921 Lactuca sativa HOM05D007739 ORTHO05D009838 2.0e-16 90.1 191 36.1
Glyma.02G280600 Glycine max HOM05D007739 ORTHO05D009838 3.4e-16 89.4 195 34.9
Nitab4.5_0006104g0010 Nicotiana tabacum HOM05D007739 ORTHO05D009838 3.4e-16 89.4 221 33.0
Actinidia11663 Actinidia chinensis HOM05D007739 ORTHO05D009838 5.8e-16 88.6 165 39.4
LjContig00049g0023861 Lotus japonicus HOM05D007739 ORTHO05D009838 1.3e-15 87.4 197 34.0
Potri.009G072000 Populus trichocarpa HOM05D007739 ORTHO05D009838 1.3e-15 87.4 199 34.7
ECA233G0993 Erigeron canadensis HOM05D007739 ORTHO05D009838 2.9e-15 86.3 185 33.5
Ca_06221_v3 Cicer arietinum L. HOM05D007739 ORTHO05D009838 3.8e-15 85.9 196 36.2
Phvul.008G200100 Phaseolus vulgaris HOM05D007739 ORTHO05D009838 6.4e-15 85.1 197 34.5
BcaB04g17497 Brassica carinata HOM05D007739 ORTHO05D009838 5.4e-14 82.0 61 67.2
TAR633G0364 Trochodendron aralioides HOM05D007739 ORTHO05D009838 5.4e-14 82.0 198 33.8
BcaB01g01094 Brassica carinata HOM05D000457 ORTHO05D003394 7.1e-14 81.6 61 68.9
BcaB01g02116 Brassica carinata HOM05D007739 ORTHO05D009838 7.1e-14 81.6 55 72.7
Sopen07g027120 Solanum pennellii HOM05D007739 ORTHO05D009838 9.3e-14 81.3 196 34.7
SalBow6G6289 Salvia bowleyana HOM05D007739 ORTHO05D009838 1.2e-13 80.9 220 32.7
Cc01_g05640 Coffea canephora HOM05D007739 ORTHO05D009838 2.7e-13 79.7 200 35.5
Haze_23208 Corylus avellana HOM05D007739 ORTHO05D009838 2.7e-13 79.7 135 38.5
PGSC0003DMG400020420 Solanum tuberosum HOM05D007739 ORTHO05D009838 4.6e-13 79.0 190 33.7
Rhsim01G0194300 Rhododendron simsii HOM05D007739 ORTHO05D009838 1.0e-12 77.8 187 35.8
Sc03g0010980 Simmondsia chinensis HOM05D007739 ORTHO05D009838 1.7e-12 77.0 189 31.7
Solyc07g055110.3 Solanum lycopersicum HOM05D007739 ORTHO05D009838 1.7e-12 77.0 194 33.5
GSVIVG01037253001 Vitis vinifera HOM05D007739 ORTHO05D009838 3.9e-12 75.9 186 33.3
VMungo0647G2062 Vigna mungo HOM05D007739 ORTHO05D009838 6.6e-12 75.1 248 30.2
TPR.G19359 Trifolium pratense HOM05D007739 ORTHO05D009838 1.9e-11 73.6 211 31.3
BcaB01g02117 Brassica carinata HOM05D007739 ORTHO05D009838 2.5e-11 73.2 53 71.7
Cpa.g.sc157.69 Carica papaya HOM05D007739 ORTHO05D009838 3.3e-11 72.8 193 34.2
C03p78450 Brassica napus HOM05D007739 ORTHO05D009838 4.3e-11 72.4 52 73.1
BcaC05g28187 Brassica carinata HOM05D007739 ORTHO05D009838 7.3e-11 71.6 69 60.9
BcaC06g35816 Brassica carinata HOM05D007739 ORTHO05D039970 7.3e-11 71.6 52 69.2
C05p42330 Brassica napus HOM05D007739 ORTHO05D009838 7.3e-11 71.6 69 60.9
C04p31590 Brassica napus HOM05D007739 ORTHO05D009838 9.6e-11 71.2 50 72.0
C04p20650 Brassica napus HOM05D007739 ORTHO05D009838 1.3e-10 70.9 50 70.0
SGA_v2.0_scaffold29G12264 Striga asiatica HOM05D007739 ORTHO05D009838 1.3e-10 70.9 202 31.2
C07p10560 Brassica napus HOM05D007739 ORTHO05D039970 2.1e-10 70.1 52 69.2
MSTRG.21351 Avicennia marina HOM05D007739 ORTHO05D009838 3.6e-10 69.3 229 30.6
TAR633G2358 Trochodendron aralioides HOM05D007739 ORTHO05D009838 6.2e-10 68.6 195 31.3
BcaC02g10206 Brassica carinata HOM05D007739 ORTHO05D009838 8.1e-10 68.2 50 70.0
Oeu001493.2 Olea europaea HOM05D007739 ORTHO05D009838 4.0e-09 65.9 210 30.0
C09p20660 Brassica napus HOM05D007739 ORTHO05D009838 2.6e-08 63.2 48 68.8
unitig_578.g16651 Utricularia gibba HOM05D007739 ORTHO05D009838 4.9e-07 58.9 194 31.4
BcaB01g02115 Brassica carinata HOM05D007739 ORTHO05D009838 1.9e-06 57.0 39 71.8


User provided reference genes

Program Settings