Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G14060 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 2.8e-64 248.4 126 100.0
AL3G26260 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 2.7e-62 241.9 126 96.8
Carub.0003s1365 Capsella rubella HOM05D006176 ORTHO05D007346 1.8e-55 219.2 127 90.6
Sp3g12300 Schrenkiella parvula HOM05D006176 ORTHO05D007346 1.0e-50 203.4 126 80.2
CARHR088900 Cardamine hirsuta HOM05D006176 ORTHO05D007346 9.8e-49 196.8 126 79.4
Thhalv10021772m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 3.2e-47 191.8 126 77.0
A01p39590 Brassica napus HOM05D006176 ORTHO05D007346 3.9e-45 184.9 126 76.2
BraA01t03999Z Brassica rapa HOM05D006176 ORTHO05D007346 3.9e-45 184.9 126 76.2
C01p50530 Brassica napus HOM05D006176 ORTHO05D007346 2.5e-44 182.2 126 75.4
BolC1t05004H Brassica oleracea HOM05D006176 ORTHO05D007346 3.3e-44 181.8 126 75.4
BcaNung04891 Brassica carinata HOM05D006176 ORTHO05D007346 1.2e-43 179.9 126 74.6
Aa31LG8G1260 Aethionema arabicum HOM05D006176 ORTHO05D007346 8.6e-37 157.1 123 64.2
CARHR044470 Cardamine hirsuta HOM05D006176 ORTHO05D007346 6.2e-35 151.0 129 65.9
Thhalv10011868m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 6.2e-35 151.0 129 65.1
Carub.0001s4336 Capsella rubella HOM05D006176 ORTHO05D007346 4.0e-34 148.3 129 63.6
Sp1g40570 Schrenkiella parvula HOM05D006176 ORTHO05D007346 2.0e-33 146.0 129 63.6
AT1G54120 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 1.3e-32 143.3 121 66.1
BraA06t23268Z Brassica rapa HOM05D006176 ORTHO05D007346 1.7e-32 142.9 129 62.0
BcaB07g33263 Brassica carinata HOM05D006176 ORTHO05D007346 2.9e-32 142.1 129 62.0
A06p00540 Brassica napus HOM05D006176 ORTHO05D007346 3.7e-32 141.7 129 62.0
A08p01210 Brassica napus HOM05D006176 ORTHO05D007346 4.9e-32 141.4 129 62.0
BraA08t32172Z Brassica rapa HOM05D006176 ORTHO05D007346 4.9e-32 141.4 129 62.0
BcaC08g43592 Brassica carinata HOM05D006176 ORTHO05D007346 1.1e-31 140.2 129 61.2
C06p09900 Brassica napus HOM05D006176 ORTHO05D007346 1.1e-31 140.2 129 61.2
BolC6t36062H Brassica oleracea HOM05D006176 ORTHO05D007346 1.1e-31 140.2 129 61.2
BcaB04g17025 Brassica carinata HOM05D006176 ORTHO05D007346 2.4e-31 139.0 129 60.5
AL1G62840 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 7.1e-31 137.5 131 62.6
Aa31LG10G1290 Aethionema arabicum HOM05D006176 ORTHO05D007346 1.2e-30 136.7 120 56.7
BcaC01g01436 Brassica carinata HOM05D006176 ORTHO05D007346 2.7e-30 135.6 129 59.7
C03p92010 Brassica napus HOM05D006176 ORTHO05D007346 2.7e-30 135.6 129 59.7
C06p15630 Brassica napus HOM05D006176 ORTHO05D007346 2.7e-30 135.6 116 64.7
BolC3t21519H Brassica oleracea HOM05D006176 ORTHO05D007346 2.7e-30 135.6 129 59.7
THA.LOC104810370 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 2.5e-28 129.0 109 65.1
BcaB02g10861 Brassica carinata HOM05D006176 ORTHO05D007346 7.3e-28 127.5 118 61.0
THA.LOC104822658 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 1.8e-26 122.9 123 56.1
BolC6t36752H Brassica oleracea HOM05D006176 ORTHO05D007346 2.1e-22 109.4 92 66.3
BcaNung06452 Brassica carinata HOM05D006176 ORTHO05D007346 2.3e-21 105.9 72 76.4
BcaC08g44161 Brassica carinata HOM05D006176 ORTHO05D007346 3.6e-19 98.6 116 50.9
Atru.chr1.4021 Acer truncatum HOM05D006176 ORTHO05D007346 2.9e-16 89.0 122 45.1
Manes.04G145900 Manihot esculenta HOM05D006176 ORTHO05D007346 4.9e-16 88.2 123 47.2
Nitab4.5_0010678g0020 Nicotiana tabacum HOM05D006176 ORTHO05D007346 8.4e-16 87.4 102 47.1
Atru.chr1.4004 Acer truncatum HOM05D006176 ORTHO05D007346 9.3e-15 84.0 122 43.4
Glyma.16G008800 Glycine max HOM05D006176 ORTHO05D007346 1.2e-14 83.6 112 46.4
Cfa003523 Carpinus fangiana HOM05D006176 ORTHO05D007346 1.6e-14 83.2 110 46.4
Nitab4.5_0000255g0320 Nicotiana tabacum HOM05D006176 ORTHO05D007346 6.0e-14 81.3 102 45.1
TAR624G0214 Trochodendron aralioides HOM05D006176 ORTHO05D007346 6.0e-14 81.3 110 45.5
Lalb_Chr04g0263581 Lupinus albus HOM05D006176 ORTHO05D007346 7.9e-14 80.9 108 44.4
Thecc.06G122200 Theobroma cacao HOM05D006176 ORTHO05D007346 1.7e-13 79.7 118 39.8
Ca_23393_v3 Cicer arietinum L. HOM05D006176 ORTHO05D007346 3.0e-13 79.0 109 45.0
Haze_16045 Corylus avellana HOM05D006176 ORTHO05D007346 3.0e-13 79.0 110 44.5
Gohir.A05G139800 Gossypium hirsutum HOM05D006176 ORTHO05D007346 3.0e-13 79.0 121 42.1
Gohir.D05G142000 Gossypium hirsutum HOM05D006176 ORTHO05D007346 3.0e-13 79.0 121 42.1
Gorai.009G146100 Gossypium raimondii HOM05D006176 ORTHO05D007346 3.0e-13 79.0 121 42.1
Medtr8g021025 Medicago truncatula HOM05D006176 ORTHO05D007346 5.1e-13 78.2 117 41.9
CiPaw.01G217500 Carya illinoinensis HOM05D006176 ORTHO05D007346 6.6e-13 77.8 95 48.4
Cpa.g.c40357 Carica papaya HOM05D006176 ORTHO05D007346 8.7e-13 77.4 110 42.7
Duzib192G0929 Durio zibethinus HOM05D006176 ORTHO05D007346 8.7e-13 77.4 95 48.4
Glyma.07G040000 Glycine max HOM05D006176 ORTHO05D007346 1.1e-12 77.0 103 46.6
Sopen06g022380 Solanum pennellii HOM05D006176 ORTHO05D007346 1.1e-12 77.0 99 46.5
Phvul.010G128700 Phaseolus vulgaris HOM05D006176 ORTHO05D007346 1.9e-12 76.3 112 42.0
Potri.003G067200 Populus trichocarpa HOM05D006176 ORTHO05D007346 1.9e-12 76.3 105 40.0
PGSC0003DMG400004890 Solanum tuberosum HOM05D006176 ORTHO05D007346 1.9e-12 76.3 104 45.2
Lalb_Chr14g0361931 Lupinus albus HOM05D006176 ORTHO05D007346 3.3e-12 75.5 125 36.8
Ah.08g216920 Amaranthus hybridus HOM05D006176 ORTHO05D007346 7.4e-12 74.3 120 39.2
Migut.I01087 Erythranthe guttata HOM05D006176 ORTHO05D007346 7.4e-12 74.3 103 46.6
TPR.G16753 Trifolium pratense HOM05D006176 ORTHO05D007346 7.4e-12 74.3 106 45.3
Sc12g0010640 Simmondsia chinensis HOM05D006176 ORTHO05D007346 9.6e-12 73.9 96 42.7
COL.COLO4_30741 Corchorus olitorius HOM05D006176 ORTHO05D007346 1.3e-11 73.6 105 43.8
Lj3g0022886 Lotus japonicus HOM05D006176 ORTHO05D007346 1.6e-11 73.2 114 41.2
TWI75G0921 Tripterygium wilfordii HOM05D006176 ORTHO05D007346 3.6e-11 72.0 101 47.5
Actinidia26022 Actinidia chinensis HOM05D006176 ORTHO05D007346 4.8e-11 71.6 110 44.5
Oeu000400.1 Olea europaea HOM05D006176 ORTHO05D007346 4.8e-11 71.6 91 46.2
MBI19_g09833_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 6.2e-11 71.2 121 35.5
Nn8g38624 Nelumbo nucifera HOM05D006176 ORTHO05D007346 6.2e-11 71.2 115 40.0
PSO421G0391 Papaver somniferum HOM05D006176 ORTHO05D007346 6.2e-11 71.2 117 37.6
Aqoxy2G03952 Aquilegia oxysepala HOM05D006176 ORTHO05D007346 8.1e-11 70.9 101 41.6
Dinv37860 Davidia involucrata HOM05D006176 ORTHO05D007346 8.1e-11 70.9 103 43.7
Gohir.A10G054700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 8.1e-11 70.9 124 38.7
Gohir.D10G056700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 8.1e-11 70.9 124 38.7
Potri.001G167600 Populus trichocarpa HOM05D006176 ORTHO05D007346 8.1e-11 70.9 105 40.0
FAN09G3283 Fragaria x ananassa HOM05D006176 ORTHO05D007346 1.8e-10 69.7 110 40.9
Gorai.011G060500 Gossypium raimondii HOM05D006176 ORTHO05D007346 1.8e-10 69.7 124 38.7
RcHm_v2.0_Chr2g0146001 Rosa chinensis HOM05D006176 ORTHO05D007346 4.0e-10 68.6 111 44.1
FvH4_6g34980 Fragaria vesca HOM05D006176 ORTHO05D007346 5.3e-10 68.2 110 40.9
FAN05G0172 Fragaria x ananassa HOM05D006176 ORTHO05D007346 5.3e-10 68.2 107 40.2
FAN14G1476 Fragaria x ananassa HOM05D006176 ORTHO05D007346 5.3e-10 68.2 110 40.9
Lalb_Chr04g0261121 Lupinus albus HOM05D006176 ORTHO05D007346 6.9e-10 67.8 110 41.8
Sed0000884 Sechium edule HOM05D006176 ORTHO05D007346 6.9e-10 67.8 102 40.2
Dinv20423 Davidia involucrata HOM05D006176 ORTHO05D007346 9.0e-10 67.4 91 46.2
EL10Ac7g16423 Beta vulgaris HOM05D006176 ORTHO05D007346 1.2e-09 67.0 123 36.6
vmacro22033 Vaccinium macrocarpon HOM05D006176 ORTHO05D007346 1.2e-09 67.0 92 44.6
Solyc06g062930.1 Solanum lycopersicum HOM05D006176 ORTHO05D007346 1.5e-09 66.6 99 42.4
SGA_v2.0_scaffold122G33347 Striga asiatica HOM05D006176 ORTHO05D007346 1.5e-09 66.6 118 39.8
Oeu043644.1 Olea europaea HOM05D006176 ORTHO05D007346 4.5e-09 65.1 103 42.7
MD17G1166900 Malus domestica HOM05D006176 ORTHO05D007346 5.8e-09 64.7 107 38.3
Rhsim12G0210400 Rhododendron simsii HOM05D006176 ORTHO05D007346 1.7e-08 63.2 96 42.7
MD09G1180800 Malus domestica HOM05D006176 ORTHO05D007346 2.2e-08 62.8 107 37.4
Peaxi162Scf00038g02015 Petunia axillaris HOM05D006176 ORTHO05D007346 3.8e-08 62.0 89 42.7
Sabra03G0039100 Salix brachista HOM05D006176 ORTHO05D007346 3.8e-08 62.0 105 36.2
Prupe.3G039100 Prunus persica HOM05D006176 ORTHO05D007346 8.4e-08 60.8 109 40.4
MELO3C022667.2 Cucumis melo HOM05D006176 ORTHO05D007346 1.1e-07 60.5 98 38.8
PSO063G0286 Papaver somniferum HOM05D006176 ORTHO05D007346 1.9e-07 59.7 104 35.6
CANSAT56G3952 Cannabis sativa HOM05D006176 ORTHO05D007346 2.4e-07 59.3 109 37.6
Migut.D00934 Erythranthe guttata HOM05D006176 ORTHO05D007346 2.4e-07 59.3 102 40.2
Rhsim12G0210800 Rhododendron simsii HOM05D006176 ORTHO05D007346 2.4e-07 59.3 91 42.9
Lsat_1_v5_gn_4_94161 Lactuca sativa HOM05D006176 ORTHO05D007346 4.2e-07 58.5 97 39.2
CsaV3_3G030710 Cucumis sativus L. HOM05D006176 ORTHO05D007346 5.5e-07 58.2 90 40.0
Sed0005659 Sechium edule HOM05D006176 ORTHO05D007346 9.3e-07 57.4 98 38.8
MBI13_g35417_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 2.1e-06 56.2 99 30.3
SGA_v2.0_scaffold4G02067 Striga asiatica HOM05D006176 ORTHO05D007346 2.7e-06 55.8 97 38.1
ClCG07G014560 Citrullus lanatus HOM05D006176 ORTHO05D007346 3.5e-06 55.5 94 39.4
PGR102G2654 Punica granatum HOM05D006176 ORTHO05D007346 4.6e-06 55.1 87 40.2


User provided reference genes

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