Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 3.3e-248 861.3 443 100.0
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.0e-221 772.3 444 89.4
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 5.5e-171 604.7 446 70.6
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 8.0e-138 494.6 431 60.1
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 2.0e-136 490.0 440 58.6
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 7.5e-136 488.0 445 58.4
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.2e-135 486.5 440 57.5
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 2.1e-122 443.4 442 54.3
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 2.1e-122 443.4 442 54.3
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 2.1e-122 443.4 442 54.3
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 1.3e-119 434.1 443 53.3
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 2.2e-119 433.3 443 53.3
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 1.7e-116 423.7 451 53.0
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 8.6e-116 421.4 402 54.7
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 2.5e-107 393.3 457 46.4
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 1.2e-96 357.8 408 47.1
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.0e-96 357.1 399 48.6
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 3.4e-96 356.3 397 48.9
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.3e-95 354.4 399 48.1
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.7e-95 354.0 397 47.6
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 5.4e-94 349.0 400 46.5
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 1.2e-93 347.8 442 45.5
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 3.5e-93 346.3 442 45.0
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 6.0e-93 345.5 392 46.9
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 6.0e-93 345.5 399 44.1
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 3.9e-92 342.8 402 44.3
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 1.1e-91 341.3 400 45.8
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.9e-91 340.5 440 46.1
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 3.3e-91 339.7 395 48.1
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 5.6e-91 339.0 430 45.1
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 9.6e-91 338.2 440 45.9
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.3e-90 337.8 438 44.7
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 2.8e-90 336.7 450 44.2
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 3.6e-90 336.3 407 45.5
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 4.8e-90 335.9 398 46.7
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.8e-89 334.0 459 42.3
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 2.4e-89 333.6 443 42.7
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 5.3e-89 332.4 446 45.1
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 3.4e-88 329.7 408 43.9
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.3e-87 327.8 419 43.4
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 3.8e-87 326.2 407 42.3
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 4.9e-87 325.9 392 45.2
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 6.4e-87 325.5 393 45.3
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.4e-86 324.3 398 44.0
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 1.4e-86 324.3 419 44.6
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 4.2e-86 322.8 390 46.4
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 9.3e-86 321.6 394 44.7
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.6e-85 320.9 407 43.2
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 1.6e-85 320.9 393 46.3
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 3.5e-85 319.7 401 42.9
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 7.9e-85 318.5 407 44.2
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 5.1e-84 315.8 398 43.7
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 6.7e-84 315.5 443 42.4
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 8.7e-84 315.1 407 43.2
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.5e-83 314.3 414 42.5
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 1.9e-83 313.9 400 45.5
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.9e-83 313.9 422 42.7
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 2.5e-83 313.5 357 45.7
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 7.4e-83 312.0 398 42.7
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 7.4e-83 312.0 439 42.6
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 2.8e-82 310.1 408 40.9
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.8e-82 309.3 422 43.8
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 6.2e-82 308.9 423 40.7
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 6.2e-82 308.9 417 42.0
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 8.1e-82 308.5 431 40.6
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.1e-81 308.1 404 42.8
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.8e-81 307.4 407 40.8
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 5.3e-81 305.8 401 42.4
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 6.9e-81 305.4 428 41.8
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 1.2e-80 304.7 430 41.6
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 3.4e-80 303.1 394 42.4
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.5e-80 302.8 402 42.0
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 7.6e-80 302.0 397 41.1
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 1.7e-79 300.8 416 41.1
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 1.7e-79 300.8 396 41.9
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 1.7e-79 300.8 402 42.8
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.8e-79 299.7 417 40.0
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 1.1e-78 298.1 427 38.6
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-78 298.1 417 39.8
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-78 298.1 416 39.9
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 4.2e-78 296.2 372 46.8
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 4.2e-78 296.2 435 38.6
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 4.2e-78 296.2 430 40.0
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 5.5e-78 295.8 348 47.7
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 9.3e-78 295.0 421 41.6
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 3.9e-76 289.7 443 37.9
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.1e-75 288.1 423 40.2
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.1e-73 281.6 400 40.5
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 1.1e-73 281.6 418 40.0
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 2.4e-73 280.4 405 40.2
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.1e-73 279.6 466 37.1
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 4.1e-73 279.6 405 40.5
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.0e-72 277.3 427 38.4
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 2.6e-72 276.9 423 40.2
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 3.8e-71 273.1 394 38.8
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 6.5e-71 272.3 441 37.4
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 8.4e-71 271.9 424 37.3
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.1e-70 271.6 403 36.5
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 1.1e-70 271.6 417 40.3
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 5.5e-70 269.2 399 39.6
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 9.3e-70 268.5 428 36.4
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 1.3e-68 264.6 314 46.2
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 6.7e-68 262.3 607 30.1
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 8.7e-68 261.9 431 34.6
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.5e-67 261.2 423 37.4
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 4.8e-66 256.1 512 34.2
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.0e-63 248.4 457 33.0
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 2.6e-56 223.8 405 34.8
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.4e-56 223.4 446 34.1
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.7e-56 222.2 390 36.2
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.8e-55 219.9 238 50.8
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 5.0e-55 219.5 247 49.0
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 8.5e-55 218.8 429 33.8
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 3.3e-51 206.8 312 37.5
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 2.2e-50 204.1 300 41.0
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 6.3e-50 202.6 440 33.9
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 8.2e-50 202.2 407 33.4
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.1e-49 201.8 273 40.7
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 5.0e-47 193.0 220 44.5
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 3.0e-44 183.7 287 36.9
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 1.8e-41 174.5 397 32.0
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 7.0e-41 172.6 218 41.7
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 1.2e-40 171.8 455 29.5
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 3.5e-40 170.2 307 34.5
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 1.1e-38 165.2 424 30.9
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 1.2e-35 155.2 432 29.9
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.0e-32 144.4 230 37.4
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.6e-27 127.5 157 48.4
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 4.4e-27 126.7 238 31.1
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 5.7e-27 126.3 180 46.1
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 1.7e-26 124.8 108 56.5
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.2e-26 124.4 140 42.9
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 6.3e-26 122.9 328 30.2
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 8.3e-26 122.5 297 29.6
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.1e-25 120.2 394 28.2
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.0e-23 115.5 243 34.2
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.7e-23 114.8 390 28.5
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 8.6e-23 112.5 391 27.1
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 1.0e-20 105.5 337 27.6
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.0e-20 104.0 105 52.4
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 2.0e-19 101.3 182 37.4
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.9e-18 97.4 116 44.8
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 1.4e-17 95.1 111 44.1
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.8e-17 94.7 90 52.2
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 2.0e-16 91.3 452 24.8
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.0e-15 89.0 165 37.0
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 2.5e-14 84.3 150 38.0
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.1e-13 81.3 126 37.3
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.9e-10 70.9 111 33.3
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 6.4e-10 69.7 94 38.3
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 7.8e-08 62.8 50 56.0
ATR0589G117 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.5e-06 57.8 85 38.8


User provided reference genes

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