Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 3.8e-76 288.1 148 100.0
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 1.6e-74 282.7 148 98.0
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 2.6e-69 265.4 148 90.5
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 2.5e-67 258.8 148 91.2
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 2.7e-66 255.4 150 90.7
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 2.3e-65 252.3 149 88.6
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 3.0e-65 251.9 149 89.3
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 6.7e-65 250.8 148 88.5
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 6.7e-65 250.8 148 88.5
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 7.4e-64 247.3 149 87.9
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 7.4e-64 247.3 149 88.6
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 3.7e-63 245.0 149 87.2
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 4.8e-63 244.6 149 87.9
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 1.1e-62 243.4 149 87.2
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 3.1e-62 241.9 148 86.5
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 4.5e-61 238.0 153 85.0
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 1.7e-60 236.1 150 86.0
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 3.2e-51 205.3 170 67.1
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 9.8e-48 193.7 154 70.8
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 4.2e-43 178.3 125 78.4
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 1.4e-41 173.3 149 66.4
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 5.2e-41 171.4 150 66.0
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 8.9e-41 170.6 148 64.2
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 2.6e-40 169.1 149 65.1
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 3.4e-40 168.7 179 59.2
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 4.4e-40 168.3 151 64.2
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 9.8e-40 167.2 149 64.4
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 9.8e-40 167.2 151 63.6
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 1.3e-39 166.8 151 63.6
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.7e-39 166.4 150 61.3
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 2.2e-39 166.0 150 62.0
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 2.2e-39 166.0 148 61.5
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 2.8e-39 165.6 148 60.8
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 3.7e-39 165.2 149 63.8
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 4.9e-39 164.9 150 61.3
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 4.9e-39 164.9 150 63.3
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.4e-38 163.3 148 61.5
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.8e-38 162.9 151 61.6
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 1.8e-38 162.9 150 62.0
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.8e-38 162.9 150 62.0
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 2.4e-38 162.5 149 63.1
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 4.1e-38 161.8 151 62.9
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 4.1e-38 161.8 150 62.0
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 5.4e-38 161.4 150 61.3
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.6e-37 159.8 151 62.3
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.0e-37 159.5 150 59.3
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 2.7e-37 159.1 153 60.8
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 1.0e-36 157.1 151 60.3
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 3.8e-36 155.2 152 59.9
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 1.5e-35 153.3 151 59.6
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 4.3e-35 151.8 149 59.7
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 7.3e-35 151.0 173 52.6
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 7.3e-35 151.0 152 59.2
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.6e-34 149.8 149 59.1
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 3.6e-34 148.7 149 63.8
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 3.6e-34 148.7 151 58.9
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 4.7e-34 148.3 151 59.6
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 1.8e-33 146.4 160 55.6
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 1.8e-33 146.4 151 58.3
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 2.3e-33 146.0 159 57.9
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 4.0e-33 145.2 150 55.3
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 5.2e-33 144.8 148 57.4
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 5.2e-33 144.8 147 56.5
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 1.5e-32 143.3 149 57.7
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.0e-32 142.9 150 55.3
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 2.6e-32 142.5 143 58.7
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 1.3e-31 140.2 150 59.3
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 2.2e-31 139.4 148 52.0
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 2.2e-31 139.4 156 57.7
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 2.2e-31 139.4 151 55.0
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 2.9e-31 139.0 165 50.3
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.9e-31 139.0 149 55.0
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 2.9e-31 139.0 151 53.0
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.7e-31 138.7 149 54.4
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 3.7e-31 138.7 152 54.6
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 3.7e-31 138.7 151 55.0
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 6.4e-31 137.9 149 51.7
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 6.4e-31 137.9 169 49.7
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 8.3e-31 137.5 147 53.1
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.9e-30 136.3 151 53.0
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 2.4e-30 136.0 101 74.3
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 4.1e-30 135.2 164 54.3
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 5.4e-30 134.8 150 56.7
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 7.0e-30 134.4 142 54.9
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 9.2e-30 134.0 155 53.5
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 9.2e-30 134.0 149 55.0
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 2.7e-29 132.5 124 57.3
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 1.0e-28 130.6 155 53.5
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 1.0e-28 130.6 157 54.8
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 3.0e-28 129.0 151 51.0
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 3.9e-28 128.6 150 52.0
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 5.0e-28 128.3 128 58.6
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 8.6e-28 127.5 150 52.0
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 7.3e-27 124.4 145 56.6
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 1.2e-26 123.6 144 55.6
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 1.4e-25 120.2 151 51.7
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 1.4e-25 120.2 79 78.5
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 9.8e-24 114.0 153 49.0
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.7e-23 113.2 154 50.6
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 2.9e-23 112.5 125 51.2
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 1.4e-22 110.2 149 53.0
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 5.4e-22 108.2 131 49.6
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 9.2e-22 107.5 152 46.7
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 4.6e-21 105.1 149 47.7
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 5.1e-20 101.7 152 42.8
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 1.9e-19 99.8 126 49.2
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 4.3e-19 98.6 74 66.2
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.1e-17 92.4 137 43.1
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 2.0e-16 89.7 123 44.7
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 4.4e-16 88.6 122 46.7
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 2.4e-14 82.8 95 48.4
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 1.6e-13 80.1 103 52.4
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.6e-13 80.1 87 49.4
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 2.1e-13 79.7 94 47.9
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.5e-11 73.6 121 42.1
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 1.9e-11 73.2 92 48.9
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 7.3e-11 71.2 128 38.3
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 4.7e-10 68.6 52 63.5
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 8.1e-10 67.8 130 37.7
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 1.8e-09 66.6 58 56.9
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 2.6e-08 62.8 71 47.9
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.3e-07 60.5 46 67.4
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.9e-07 59.3 42 69.0
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 4.9e-07 58.5 94 41.5
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 1.4e-06 57.0 93 38.7
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 2.4e-06 56.2 92 37.0
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 7.1e-06 54.7 63 47.6


User provided reference genes

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