Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G13780 Arabidopsis thaliana HOM05D007444 ORTHO05D009359 2.5e-122 442.6 235 100.0
AL3G25850 Arabidopsis lyrata HOM05D007444 ORTHO05D009359 1.8e-96 356.7 222 83.3
CARHR088510 Cardamine hirsuta HOM05D007444 ORTHO05D009359 2.2e-78 296.6 230 77.4
Carub.0003s1330 Capsella rubella HOM05D007444 ORTHO05D009359 3.8e-78 295.8 231 74.9
C05p54050 Brassica napus HOM05D007444 ORTHO05D009359 1.7e-70 270.4 233 69.5
BolC5t34070H Brassica oleracea HOM05D007444 ORTHO05D009359 1.7e-70 270.4 233 69.5
BcaB06g25436 Brassica carinata HOM05D007444 ORTHO05D009359 5.5e-69 265.4 231 64.5
Thhalv10021210m.g Eutrema salsugineum HOM05D007444 ORTHO05D009359 7.2e-69 265.0 232 69.0
BraA05t22371Z Brassica rapa HOM05D007444 ORTHO05D009359 4.7e-68 262.3 226 69.9
Sp3g11980 Schrenkiella parvula HOM05D007444 ORTHO05D009359 4.0e-67 259.2 233 68.2
Aa31LG8G960 Aethionema arabicum HOM05D007444 ORTHO05D009359 4.8e-65 252.3 224 61.2
THA.LOC104815643 Tarenaya hassleriana HOM05D007444 ORTHO05D009359 1.4e-64 250.8 237 56.1
A05p35640 Brassica napus HOM05D007444 ORTHO05D009359 2.4e-64 250.0 228 68.0
Duzib235G0092 Durio zibethinus HOM05D007444 ORTHO05D009359 6.4e-49 198.7 236 47.0
Lj9A520T86 Lonicera japonica HOM05D007444 ORTHO05D009359 3.5e-47 193.0 243 46.1
FAN14G4700 Fragaria x ananassa HOM05D007444 ORTHO05D009359 6.0e-47 192.2 239 46.9
FvH4_6g33680 Fragaria vesca HOM05D007444 ORTHO05D009359 3.9e-46 189.5 239 46.4
Nitab4.5_0005918g0020 Nicotiana tabacum HOM05D007444 ORTHO05D009359 1.5e-45 187.6 253 45.1
Nitab4.5_0000255g0240 Nicotiana tabacum HOM05D007444 ORTHO05D009359 4.3e-45 186.0 253 43.1
Manes.11G025100 Manihot esculenta HOM05D007444 ORTHO05D009359 1.2e-44 184.5 249 47.8
Hund20831 Selenicereus undatus HOM05D007444 ORTHO05D009359 2.1e-44 183.7 262 39.3
Medtr2g099820 Medicago truncatula HOM05D007444 ORTHO05D009359 2.8e-44 183.3 222 42.3
FAN09G3948 Fragaria x ananassa HOM05D007444 ORTHO05D009359 3.6e-44 183.0 239 45.2
CiPaw.02G139200 Carya illinoinensis HOM05D007444 ORTHO05D009359 6.2e-44 182.2 242 41.3
Ca_01210_v3 Cicer arietinum L. HOM05D007444 ORTHO05D009359 1.1e-43 181.4 226 41.2
Cc04_g01830 Coffea canephora HOM05D007444 ORTHO05D009359 2.3e-43 180.3 239 41.8
QL05p011652 Quercus lobata HOM05D007444 ORTHO05D009359 3.1e-43 179.9 249 47.4
Ah.08g216430 Amaranthus hybridus HOM05D007444 ORTHO05D009359 4.0e-43 179.5 256 44.1
Phvul.005G158200 Phaseolus vulgaris HOM05D007444 ORTHO05D009359 4.0e-43 179.5 227 44.1
Psat5g292040 Pisum sativum HOM05D007444 ORTHO05D009359 4.0e-43 179.5 223 44.8
Eucgr.F03140 Eucalyptus grandis HOM05D007444 ORTHO05D009359 6.8e-43 178.7 240 41.2
MD09G1191700 Malus domestica HOM05D007444 ORTHO05D009359 8.9e-43 178.3 238 40.8
QL05p011272 Quercus lobata HOM05D007444 ORTHO05D009359 2.0e-42 177.2 248 45.2
CSS0030092 Camellia sinensis var. sinensis HOM05D007444 ORTHO05D009359 2.6e-42 176.8 248 41.9
Prupe.3G047900 Prunus persica HOM05D007444 ORTHO05D009359 3.4e-42 176.4 256 42.6
RcHm_v2.0_Chr2g0143591 Rosa chinensis HOM05D007444 ORTHO05D009359 4.4e-42 176.0 238 44.5
vmacro17027 Vaccinium macrocarpon HOM05D007444 ORTHO05D009359 4.4e-42 176.0 253 41.1
Gohir.D06G198800 Gossypium hirsutum HOM05D007444 ORTHO05D009359 1.3e-41 174.5 179 53.1
Ciclev10026127m.g Citrus clementina HOM05D007444 ORTHO05D009359 1.7e-41 174.1 241 44.0
Sc12g0010310 Simmondsia chinensis HOM05D007444 ORTHO05D009359 1.7e-41 174.1 237 41.8
Sed0011511 Sechium edule HOM05D007444 ORTHO05D009359 2.9e-41 173.3 240 40.0
TWI36G0277 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 2.9e-41 173.3 239 46.0
TWI36G1725 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 2.9e-41 173.3 239 46.0
COL.COLO4_30661 Corchorus olitorius HOM05D007444 ORTHO05D009359 3.7e-41 172.9 179 48.6
TPR.G6573 Trifolium pratense HOM05D007444 ORTHO05D009359 4.9e-41 172.6 224 41.1
Gorai.010G231700 Gossypium raimondii HOM05D007444 ORTHO05D009359 6.4e-41 172.2 236 51.7
Haze_15975 Corylus avellana HOM05D007444 ORTHO05D009359 8.3e-41 171.8 242 47.1
Lalb_Chr14g0372751 Lupinus albus HOM05D007444 ORTHO05D009359 8.3e-41 171.8 229 39.3
GSVIVG01016873001 Vitis vinifera HOM05D007444 ORTHO05D009359 1.1e-40 171.4 230 42.2
Gohir.A06G190400 Gossypium hirsutum HOM05D007444 ORTHO05D009359 1.9e-40 170.6 179 53.6
Actinidia09035 Actinidia chinensis HOM05D007444 ORTHO05D009359 4.1e-40 169.5 252 39.7
PGSC0003DMG400004847 Solanum tuberosum HOM05D007444 ORTHO05D009359 5.4e-40 169.1 244 46.3
Glyma.15G024900 Glycine max HOM05D007444 ORTHO05D009359 9.2e-40 168.3 223 41.3
Potri.001G196700 Populus trichocarpa HOM05D007444 ORTHO05D009359 1.3e-38 164.5 232 43.1
PGR119G0376 Punica granatum HOM05D007444 ORTHO05D009359 1.3e-38 164.5 175 48.0
Sopen06g022180 Solanum pennellii HOM05D007444 ORTHO05D009359 3.9e-38 162.9 244 44.7
Peaxi162Scf00207g00133 Petunia axillaris HOM05D007444 ORTHO05D009359 6.6e-38 162.2 190 45.3
AUR62009843 Chenopodium quinoa HOM05D007444 ORTHO05D009359 8.6e-38 161.8 272 38.6
Cfa003571 Carpinus fangiana HOM05D007444 ORTHO05D009359 1.5e-37 161.0 180 45.6
PSO017G2704 Papaver somniferum HOM05D007444 ORTHO05D009359 2.8e-36 156.8 253 38.3
EL10Ac7g16359 Beta vulgaris HOM05D007444 ORTHO05D009359 4.7e-36 156.0 188 42.6
Lj3g0023369 Lotus japonicus HOM05D007444 ORTHO05D009359 6.2e-36 155.6 224 41.1
AUR62038156 Chenopodium quinoa HOM05D007444 ORTHO05D009359 3.1e-35 153.3 188 43.1
DCAR_022704 Daucus carota HOM05D007444 ORTHO05D009359 8.9e-35 151.8 240 43.8
PSO478G1587 Papaver somniferum HOM05D007444 ORTHO05D009359 2.0e-34 150.6 253 37.2
TAR383G0129 Trochodendron aralioides HOM05D007444 ORTHO05D009359 2.0e-34 150.6 267 33.3
Aqoxy7G01186 Aquilegia oxysepala HOM05D007444 ORTHO05D009359 2.6e-34 150.2 257 35.8
Sabra01G0143200 Salix brachista HOM05D007444 ORTHO05D009359 3.4e-34 149.8 214 40.7
Lsat_1_v5_gn_1_35640 Lactuca sativa HOM05D007444 ORTHO05D009359 4.4e-34 149.4 244 41.4
SGA_v2.0_scaffold68G22914 Striga asiatica HOM05D007444 ORTHO05D009359 7.5e-34 148.7 248 39.9
QL05p010974 Quercus lobata HOM05D007444 ORTHO05D009359 1.7e-33 147.5 194 42.8
Oeu039953.1 Olea europaea HOM05D007444 ORTHO05D009359 6.4e-33 145.6 254 37.4
CsaV3_3G043760 Cucumis sativus L. HOM05D007444 ORTHO05D009359 1.4e-32 144.4 230 36.1
Migut.D00964 Erythranthe guttata HOM05D007444 ORTHO05D009359 4.1e-32 142.9 232 39.7
arahy.Tifrunner.gnm1.ann1.F397YD Arachis hypogaea HOM05D007444 ORTHO05D009359 9.2e-32 141.7 176 44.3
CAN.G825.32 Capsicum annuum HOM05D007444 ORTHO05D009359 2.1e-31 140.6 250 41.6
CANSAT56G0761 Cannabis sativa HOM05D007444 ORTHO05D009359 4.6e-31 139.4 182 41.8
arahy.Tifrunner.gnm1.ann1.ZV36U3 Arachis hypogaea HOM05D007444 ORTHO05D009359 1.0e-30 138.3 176 43.8
MELO3C013088.2 Cucumis melo HOM05D007444 ORTHO05D009359 1.7e-30 137.5 230 40.4
MSTRG.4771 Avicennia marina HOM05D007444 ORTHO05D009359 5.1e-30 136.0 246 35.4
MBI01_g20340_MAGBIO Magnolia biondii HOM05D007444 ORTHO05D009359 1.1e-29 134.8 291 30.2
HanXRQChr02g0031731 Helianthus annuus HOM05D007444 ORTHO05D009359 1.9e-29 134.0 177 41.2
SalBow7G2527 Salvia bowleyana HOM05D007444 ORTHO05D009359 9.5e-29 131.7 246 38.6
ClCG07G013830 Citrullus lanatus HOM05D007444 ORTHO05D009359 3.6e-28 129.8 248 32.7
CDE05G3416 Ceratophyllum demersum HOM05D007444 ORTHO05D009359 6.8e-27 125.6 264 31.1
Cpa.g.sc25.50 Carica papaya HOM05D007444 ORTHO05D009359 3.2e-24 116.7 169 40.2
Solyc06g062700.3 Solanum lycopersicum HOM05D007444 ORTHO05D009359 2.7e-23 113.6 143 42.7
Rhsim12G0206600 Rhododendron simsii HOM05D007444 ORTHO05D009359 1.0e-22 111.7 129 48.8
HPP92_005228 Vanilla planifolia HOM05D007444 ORTHO05D009359 1.9e-21 107.5 280 28.6
Dinv37906 Davidia involucrata HOM05D007444 ORTHO05D009359 2.5e-21 107.1 110 50.9
SEGI_13370 Sequoiadendron giganteum HOM05D007444 ORTHO05D009359 2.6e-18 97.1 228 32.0
Zm00001eb277400 Zea mays HOM05D007444 ORTHO05D009359 9.9e-18 95.1 256 33.2
ECA247G2926 Erigeron canadensis HOM05D000045 ORTHO05D000067 3.2e-16 90.1 152 46.7
Hma1.2p1_0496F.1_g165930 Hydrangea macrophylla HOM05D007444 ORTHO05D009359 7.3e-13 79.0 102 41.2
Pp3c14_13390 Physcomitrium patens HOM05D007444 ORTHO05D009359 3.4e-10 70.1 112 35.7
ATR0109G024 Amborella trichopoda HOM05D007444 ORTHO05D009359 1.3e-09 68.2 131 31.3
BcaC02g12249 Brassica carinata HOM05D007444 ORTHO05D009359 5.4e-08 62.8 38 68.4


User provided reference genes

Program Settings