Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 1.9e-34 148.7 77 100.0
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 1.2e-33 146.0 77 97.4
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 2.3e-32 141.7 77 96.1
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 3.3e-31 137.9 77 93.5
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 2.8e-30 134.8 77 90.9
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 6.2e-30 133.7 77 90.9
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 6.2e-30 133.7 77 90.9
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 1.2e-28 129.4 77 90.9
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 1.2e-28 129.4 77 90.9
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 3.4e-28 127.9 77 88.3
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 1.9e-26 122.1 77 80.5
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 5.1e-24 114.0 77 75.3
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 1.4e-21 105.9 66 80.3
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 1.9e-15 85.5 69 59.4
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 1.3e-14 82.8 79 54.4
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 1.6e-14 82.4 68 58.8
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 1.6e-14 82.4 73 56.2
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 2.2e-14 82.0 67 61.2
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 4.8e-14 80.9 69 60.9
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 6.3e-14 80.5 66 63.6
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 6.3e-14 80.5 66 63.6
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 8.2e-14 80.1 78 57.7
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 1.1e-13 79.7 71 56.3
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 1.1e-13 79.7 71 56.3
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 1.4e-13 79.3 66 63.6
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 1.4e-13 79.3 64 64.1
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 1.8e-13 79.0 69 60.9
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 2.4e-13 78.6 69 60.9
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.4e-13 78.6 66 62.1
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 2.4e-13 78.6 75 58.7
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 2.4e-13 78.6 75 56.0
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 4.1e-13 77.8 67 58.2
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 4.1e-13 77.8 67 58.2
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 5.3e-13 77.4 76 50.0
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 5.3e-13 77.4 66 60.6
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 6.9e-13 77.0 61 63.9
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 6.9e-13 77.0 66 60.6
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 6.9e-13 77.0 61 65.6
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 1.2e-12 76.3 61 65.6
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 1.5e-12 75.9 76 59.2
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 1.5e-12 75.9 61 62.3
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 1.5e-12 75.9 75 54.7
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 1.5e-12 75.9 66 53.0
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.0e-12 75.5 67 56.7
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.6e-12 75.1 66 57.6
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 3.4e-12 74.7 73 54.8
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 4.5e-12 74.3 61 63.9
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 4.5e-12 74.3 67 56.7
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 4.5e-12 74.3 67 53.7
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 7.7e-12 73.6 63 57.1
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 1.0e-11 73.2 55 61.8
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 1.0e-11 73.2 61 59.0
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 1.0e-11 73.2 61 59.0
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 1.3e-11 72.8 76 55.3
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 1.3e-11 72.8 59 61.0
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 1.7e-11 72.4 64 57.8
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 2.2e-11 72.0 64 59.4
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 2.2e-11 72.0 73 52.1
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 2.9e-11 71.6 77 53.2
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 2.9e-11 71.6 59 62.7
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 3.8e-11 71.2 61 55.7
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 3.8e-11 71.2 63 57.1
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 3.8e-11 71.2 63 57.1
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 5.0e-11 70.9 60 65.0
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 5.0e-11 70.9 58 60.3
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 5.0e-11 70.9 59 59.3
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 6.5e-11 70.5 66 56.1
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 6.5e-11 70.5 63 55.6
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 1.4e-10 69.3 59 59.3
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.4e-10 69.3 79 45.6
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 1.4e-10 69.3 77 51.9
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 1.4e-10 69.3 59 57.6
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 1.9e-10 68.9 72 51.4
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 1.9e-10 68.9 63 58.7
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 1.6e-09 65.9 62 56.5
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 2.1e-09 65.5 67 49.3
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 2.7e-09 65.1 59 55.9
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 3.6e-09 64.7 66 53.0
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 7.9e-09 63.5 47 59.6
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 1.0e-08 63.2 54 50.0
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.8e-08 62.4 64 53.1
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 1.8e-08 62.4 57 54.4
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 6.7e-08 60.5 50 54.0
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 2.0e-07 58.9 61 47.5
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 4.4e-07 57.8 47 57.4
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 5.7e-07 57.4 48 54.2
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 5.7e-07 57.4 63 47.6
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 1.7e-06 55.8 52 46.2
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.7e-06 55.8 69 42.0
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.7e-06 55.8 69 42.0
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 2.2e-06 55.5 67 46.3
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 2.8e-06 55.1 62 50.0
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 3.7e-06 54.7 45 57.8
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 3.7e-06 54.7 54 48.1
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 4.8e-06 54.3 50 48.0


User provided reference genes

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