Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 7.8e-111 404.1 243 100.0
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.3e-94 349.4 225 95.1
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.5e-90 336.7 225 89.8
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 4.2e-80 302.0 224 80.8
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.8e-75 286.6 238 73.5
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.8e-75 286.6 238 73.5
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 4.0e-75 285.4 228 77.2
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 6.9e-75 284.6 225 77.8
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.7e-73 280.0 171 84.8
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.9e-70 268.9 227 65.2
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.9e-70 268.9 222 66.2
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 6.7e-70 268.1 225 64.9
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 6.7e-70 268.1 231 65.4
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 8.7e-70 267.7 225 64.9
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 8.7e-70 267.7 225 64.9
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.5e-69 266.2 227 65.6
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 3.7e-68 262.3 225 64.0
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.1e-67 258.8 222 64.9
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 3.4e-66 255.8 227 62.6
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 7.7e-66 254.6 238 59.2
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.0e-65 254.2 225 63.6
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.0e-65 254.2 226 64.2
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 8.5e-65 251.1 229 62.4
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 8.5e-65 251.1 229 62.4
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.9e-64 250.0 165 78.8
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 4.2e-64 248.8 148 86.5
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.6e-63 246.9 165 78.2
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 6.1e-63 245.0 166 76.5
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 6.1e-63 245.0 172 74.4
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 5.7e-61 238.4 218 60.6
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 4.8e-60 235.3 172 71.5
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.2e-58 230.7 162 75.9
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.2e-58 230.7 172 72.1
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.0e-58 229.9 162 75.3
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 2.6e-58 229.6 172 69.2
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 4.5e-58 228.8 172 68.6
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 4.5e-58 228.8 162 72.8
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 7.7e-58 228.0 170 72.4
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 7.7e-58 228.0 170 71.2
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.0e-57 227.6 172 71.5
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.0e-57 227.6 170 71.2
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.0e-57 227.6 176 71.6
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.3e-57 227.3 172 72.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.7e-57 226.9 172 70.3
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.7e-57 226.9 172 70.3
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.7e-57 226.9 172 72.1
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.2e-57 226.5 160 71.2
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 2.2e-57 226.5 170 72.9
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 2.2e-57 226.5 175 72.6
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 2.2e-57 226.5 172 71.5
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 2.9e-57 226.1 173 71.7
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 2.9e-57 226.1 173 69.9
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.9e-57 226.1 172 71.5
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.1e-56 224.2 171 72.5
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 1.4e-56 223.8 170 68.8
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 2.5e-56 223.0 172 70.3
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 3.2e-56 222.6 176 71.6
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 5.5e-56 221.9 169 68.6
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 5.5e-56 221.9 170 70.0
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 5.5e-56 221.9 171 69.6
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 9.4e-56 221.1 170 71.2
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.2e-55 220.7 170 71.8
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.2e-55 220.7 170 67.1
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.2e-55 220.7 170 69.4
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.2e-55 220.7 171 69.0
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 4.7e-55 218.8 218 58.3
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 4.7e-55 218.8 171 69.0
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 4.7e-55 218.8 160 72.5
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 4.7e-55 218.8 170 68.2
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 6.1e-55 218.4 160 73.8
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.8e-54 216.9 172 68.0
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 5.1e-54 215.3 181 68.0
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.5e-53 213.8 176 67.6
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.5e-53 213.8 176 67.6
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.5e-53 213.8 176 67.0
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.5e-53 213.8 176 67.6
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.5e-53 213.8 176 67.0
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 2.0e-53 213.4 160 71.9
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 2.0e-53 213.4 162 66.7
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 2.6e-53 213.0 175 69.7
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.6e-53 213.0 172 64.5
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 2.6e-53 213.0 162 68.5
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 2.6e-53 213.0 176 65.9
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 5.7e-53 211.8 161 69.6
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 7.4e-53 211.5 162 66.7
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 7.4e-53 211.5 172 68.0
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 1.7e-52 210.3 161 72.7
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 3.7e-52 209.1 172 65.7
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 6.3e-52 208.4 172 64.0
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 6.3e-52 208.4 226 54.9
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 8.2e-52 208.0 172 64.0
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.8e-51 206.8 161 68.9
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 2.4e-51 206.5 162 72.2
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.4e-51 206.5 162 66.0
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 7.0e-51 204.9 163 70.6
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 9.1e-51 204.5 172 62.8
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.2e-50 204.1 166 66.9
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.5e-50 203.8 172 64.5
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 2.6e-50 203.0 162 65.4
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 2.6e-50 203.0 174 65.5
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 4.5e-50 202.2 160 69.4
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.3e-49 200.7 166 65.7
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 2.9e-49 199.5 163 65.0
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 6.5e-49 198.4 161 66.5
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.5e-49 198.4 166 65.7
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 1.5e-48 197.2 162 63.6
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.9e-48 196.8 162 64.2
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 3.2e-48 196.1 162 63.0
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 7.2e-48 194.9 168 63.1
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 9.4e-48 194.5 156 64.1
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 9.4e-48 194.5 193 60.6
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.6e-47 193.7 151 70.9
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.0e-46 191.0 139 71.2
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.8e-46 190.3 172 61.6
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 5.2e-46 188.7 116 85.3
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.5e-45 187.2 153 64.1
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.0e-45 186.8 174 62.6
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 2.6e-45 186.4 162 63.6
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 7.4e-45 184.9 174 57.5
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.2e-44 183.3 173 57.2
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.8e-44 183.0 174 61.5
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 2.8e-44 183.0 174 61.5
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 4.8e-44 182.2 165 61.8
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.1e-43 181.0 153 61.4
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 7.0e-43 178.3 179 58.1
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 2.0e-42 176.8 172 56.4
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.7e-41 173.7 154 57.8
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.5e-41 171.8 153 57.5
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.2e-39 167.5 155 60.6
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 2.1e-39 166.8 155 59.4
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.3e-38 163.3 171 57.3
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 2.0e-37 160.2 169 56.2
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 9.7e-37 157.9 150 54.0
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 3.7e-36 156.0 139 63.3
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 3.7e-36 156.0 173 51.4
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 2.7e-34 149.8 153 53.6
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.7e-33 147.1 164 51.8
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.2e-33 146.7 130 60.8
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 5.5e-32 142.1 171 50.9
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.1e-31 140.2 130 60.0
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 3.4e-29 132.9 108 65.7
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 7.5e-29 131.7 164 48.2
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 2.4e-27 126.7 95 71.6
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.7e-26 123.2 147 48.3
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.8e-25 119.4 131 51.9
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 8.6e-25 118.2 128 51.6
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.5e-24 116.7 136 51.5
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.0e-22 109.4 93 57.0
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.1e-19 101.3 142 43.7
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 3.4e-13 79.7 73 56.2
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.2e-11 71.6 100 54.0
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 1.2e-10 71.2 54 66.7
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 5.0e-09 65.9 46 69.6
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 3.3e-08 63.2 63 58.7


User provided reference genes

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