Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 3570.0 1812 100.0
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 3463.7 1812 96.9
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 3387.0 1812 94.7
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 3353.1 1813 94.0
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 3348.5 1813 93.6
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 3323.1 1813 92.9
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 3315.8 1813 92.6
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 3311.2 1812 92.4
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 3307.7 1812 92.3
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 3305.4 1812 92.5
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 3303.8 1813 92.3
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 3301.5 1812 92.4
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 3206.8 1813 89.8
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 3025.3 1812 84.2
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2776.9 1819 76.4
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2695.2 1825 74.4
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2689.8 1819 74.1
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2688.7 1806 74.4
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2687.5 1820 73.6
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2686.8 1820 74.6
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2680.2 1825 74.2
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2677.9 1767 75.9
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2671.0 1819 73.9
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2668.6 1821 72.9
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2663.3 1822 73.5
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2660.9 1821 73.4
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2657.9 1818 73.3
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2655.9 1821 73.9
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2654.4 1819 73.2
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2648.2 1820 73.2
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2646.7 1820 72.9
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2643.2 1820 73.1
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2642.8 1820 72.9
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2632.1 1822 72.9
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2627.0 1819 72.9
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2626.7 1806 73.2
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2618.6 1839 72.4
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2599.7 1821 71.6
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2598.2 1819 71.7
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2597.8 1837 71.5
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2592.8 1821 72.8
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2583.1 1976 67.2
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2580.4 1774 73.2
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2573.9 1822 70.9
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2569.3 1821 70.3
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2566.2 1821 70.2
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2565.0 1821 70.3
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2563.9 1822 70.3
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2558.1 1931 68.4
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2557.7 1860 70.6
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2553.1 1816 71.0
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2552.3 1821 70.2
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2550.8 1819 70.4
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2549.2 1819 69.7
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2545.0 1822 70.1
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2543.1 1819 71.0
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2540.8 1822 69.6
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2539.2 1818 70.1
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2538.5 1831 70.6
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2535.8 1818 70.1
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2532.3 1819 69.5
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2530.4 1757 72.5
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2519.2 1814 69.5
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2509.2 1819 70.0
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2501.1 1677 75.3
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2494.9 1903 66.3
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2492.6 1826 69.3
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2483.0 1821 68.5
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2482.2 1820 67.6
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2479.5 1819 68.6
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2477.6 1768 70.6
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2462.6 1805 69.4
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2451.4 1814 68.6
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2450.2 1834 67.1
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2445.6 1817 68.2
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2443.7 1822 67.6
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2439.1 1819 67.7
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2427.5 1847 67.0
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2425.6 1823 67.5
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2424.4 1819 67.0
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2410.6 1893 66.2
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2383.2 1795 68.2
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2374.4 1838 66.9
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2363.2 1827 66.1
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2362.8 1950 63.2
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2346.6 1857 64.6
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2325.8 1842 64.2
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2324.3 1819 65.1
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2309.6 1822 64.9
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2306.9 1908 63.5
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2265.0 1823 62.8
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2263.0 1628 70.6
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2263.0 1830 63.1
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2240.7 1653 69.6
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2212.2 1568 72.6
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2115.5 1742 64.9
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2110.1 1683 64.7
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2078.1 1535 67.9
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2065.8 1828 57.8
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2044.6 1444 69.9
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1749.9 1452 62.6
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1726.8 1253 70.6
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1711.0 1150 73.4
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1666.0 1818 51.0
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1397.5 1865 43.2
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1397.1 1929 41.4
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1368.6 948 71.9
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1365.5 1854 41.5
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1337.8 1876 40.1
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1219.1 1836 38.7
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1181.0 1864 37.6
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1161.4 863 68.6
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1155.2 1837 37.1
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 4.4e-307 1058.9 1836 35.6
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 7.5e-291 1005.0 946 58.5
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 5.3e-289 998.8 723 68.2
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 1.2e-272 944.5 1969 32.5
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 1.2e-248 864.8 694 61.0
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 8.6e-247 858.6 1174 45.8
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 2.4e-204 717.6 505 71.1
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 4.5e-163 580.5 620 54.2
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 6.8e-135 486.9 459 54.2
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 6.0e-131 473.8 638 45.8
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 1.6e-128 465.7 1905 25.2
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 3.1e-119 434.9 339 66.4
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 6.9e-111 407.1 469 48.4
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 6.7e-106 390.6 321 64.2
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 3.1e-103 381.7 300 62.7
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 1.5e-102 379.4 220 77.7
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 3.3e-97 361.7 323 58.2
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 3.8e-93 348.2 251 74.1
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 5.5e-92 344.4 1939 23.2
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 4.3e-81 308.1 360 51.1
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 8.5e-77 293.9 225 61.8
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 7.4e-73 280.8 166 77.7
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 1.1e-65 256.9 345 46.4
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 2.4e-39 169.5 100 83.0
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 3.5e-38 165.6 1335 21.2
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.5e-36 159.5 138 61.6
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.6e-33 149.4 210 44.3
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 1.9e-31 143.3 1967 19.5
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 6.6e-21 108.2 123 55.3
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 8.6e-21 107.8 75 72.0
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 1.9e-20 106.7 65 83.1
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 1.6e-19 103.6 76 61.8
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 4.0e-18 99.0 76 55.3
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 2.0e-17 96.7 121 48.8
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 1.7e-16 93.6 60 81.7
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 2.2e-16 93.2 111 51.4
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 2.4e-15 89.7 163 39.3
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 2.7e-14 86.3 96 49.0
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 6.2e-11 75.1 73 37.0
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 1.2e-09 70.9 45 66.7
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 9.9e-09 67.8 170 35.9
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 3.8e-08 65.9 68 50.0


User provided reference genes

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