Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G13275 Arabidopsis thaliana HOM05D007771 ORTHO05D009850 4.5e-35 150.6 70 100.0
AL3G25100 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 2.1e-32 141.7 70 91.4
Sp3g11480 Schrenkiella parvula HOM05D007771 ORTHO05D009850 5.1e-31 137.1 66 92.4
BolC3t16896H Brassica oleracea HOM05D007771 ORTHO05D009850 7.4e-30 133.3 66 87.9
Carub.0003s1266 Capsella rubella HOM05D007771 ORTHO05D009850 7.4e-30 133.3 64 92.2
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.3e-29 132.5 65 89.2
Thhalv10022324m.g Eutrema salsugineum HOM05D007771 ORTHO05D009850 1.3e-29 132.5 67 91.0
CARHR087900 Cardamine hirsuta HOM05D007771 ORTHO05D009850 2.8e-29 131.3 66 89.4
C03p46260 Brassica napus HOM05D007771 ORTHO05D009850 3.7e-29 131.0 66 86.4
BolC1t05126H Brassica oleracea HOM05D007771 ORTHO05D009850 6.9e-28 126.7 62 91.9
A05p36330 Brassica napus HOM05D007771 ORTHO05D009850 9.1e-28 126.3 62 90.3
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.9e-26 121.3 62 88.7
BcaB06g25475 Brassica carinata HOM05D007771 ORTHO05D009850 6.5e-26 120.2 64 85.9
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 8.5e-26 119.8 64 87.5
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 8.5e-26 119.8 64 87.5
BcaC05g29197 Brassica carinata HOM05D007771 ORTHO05D009850 2.5e-25 118.2 62 88.7
C05p54690 Brassica napus HOM05D007771 ORTHO05D009850 2.5e-25 118.2 62 88.7
BolC5t34139H Brassica oleracea HOM05D007771 ORTHO05D009850 2.5e-25 118.2 62 88.7
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 5.5e-25 117.1 58 89.7
BraA05t22434Z Brassica rapa HOM05D007771 ORTHO05D009850 1.2e-24 115.9 62 87.1
BcaB04g16929 Brassica carinata HOM05D007771 ORTHO05D009850 3.9e-23 110.9 68 72.1
BcaC01g01562 Brassica carinata HOM05D007771 ORTHO05D009850 8.8e-23 109.8 68 70.6
A08p00340 Brassica napus HOM05D007771 ORTHO05D009850 8.8e-23 109.8 68 70.6
BolC3t21615H Brassica oleracea HOM05D007771 ORTHO05D009850 8.8e-23 109.8 68 70.6
BraA08t32092Z Brassica rapa HOM05D007771 ORTHO05D009850 1.1e-22 109.4 68 69.1
AL1G63820 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 1.5e-22 109.0 68 75.0
C03p93160 Brassica napus HOM05D007771 ORTHO05D009850 1.5e-22 109.0 68 70.6
CARHR045420 Cardamine hirsuta HOM05D007771 ORTHO05D009850 1.4e-20 102.4 64 71.9
Carub.0001s4425 Capsella rubella HOM05D007771 ORTHO05D009850 1.2e-19 99.4 64 73.4
arahy.Tifrunner.gnm1.ann1.29L1CF Arachis hypogaea HOM05D007771 ORTHO05D009850 4.7e-16 87.4 65 70.8
Gohir.D05G386700 Gossypium hirsutum HOM05D007771 ORTHO05D009850 3.9e-15 84.3 65 60.0
arahy.Tifrunner.gnm1.ann1.0J0D7Z Arachis hypogaea HOM05D007771 ORTHO05D009850 5.2e-15 84.0 65 70.8
Eucgr.F03660 Eucalyptus grandis HOM05D007771 ORTHO05D009850 1.1e-14 82.8 65 63.1
Cfa016941 Carpinus fangiana HOM05D007771 ORTHO05D009850 4.4e-14 80.9 66 65.2
MD03G1039700 Malus domestica HOM05D007771 ORTHO05D009850 1.3e-13 79.3 68 57.4
Cc05_g15490 Coffea canephora HOM05D007771 ORTHO05D009850 3.7e-13 77.8 68 61.8
Thecc.07G005300 Theobroma cacao HOM05D007771 ORTHO05D009850 3.7e-13 77.8 68 57.4
arahy.Tifrunner.gnm1.ann1.YJMT2M Arachis hypogaea HOM05D007771 ORTHO05D009850 4.8e-13 77.4 71 63.4
HanXRQChr03g0077771 Helianthus annuus HOM05D007771 ORTHO05D009850 1.1e-12 76.3 64 56.2
TWI39G0067 Tripterygium wilfordii HOM05D007771 ORTHO05D009850 1.1e-12 76.3 65 61.5
ClCG10G004130 Citrullus lanatus HOM05D007771 ORTHO05D009850 1.8e-12 75.5 65 63.1
Manes.02G224000 Manihot esculenta HOM05D007771 ORTHO05D009850 1.8e-12 75.5 47 70.2
MD11G1040400 Malus domestica HOM05D007771 ORTHO05D009850 2.4e-12 75.1 69 53.6
Glyma.02G303200 Glycine max HOM05D007771 ORTHO05D009850 4.1e-12 74.3 65 61.5
LjContig00081g0001678 Lotus japonicus HOM05D007771 ORTHO05D009850 4.1e-12 74.3 66 60.6
Potri.005G061200 Populus trichocarpa HOM05D007771 ORTHO05D009850 4.1e-12 74.3 72 52.8
QL08p001590 Quercus lobata HOM05D007771 ORTHO05D009850 4.1e-12 74.3 68 60.3
MELO3C014083.2 Cucumis melo HOM05D007771 ORTHO05D009850 5.3e-12 73.9 69 62.3
Glyma.14G010700 Glycine max HOM05D007771 ORTHO05D009850 5.3e-12 73.9 65 64.6
Potri.001G469401 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.2e-11 72.8 75 57.3
CiPaw.11G208800 Carya illinoinensis HOM05D007771 ORTHO05D009850 2.0e-11 72.0 66 60.6
Medtr5g096780 Medicago truncatula HOM05D007771 ORTHO05D009850 3.5e-11 71.2 65 56.9
Phvul.008G282400 Phaseolus vulgaris HOM05D007771 ORTHO05D009850 3.5e-11 71.2 66 59.1
Duzib268G1197 Durio zibethinus HOM05D007771 ORTHO05D009850 4.5e-11 70.9 56 60.7
HanXRQChr13g0409141 Helianthus annuus HOM05D007771 ORTHO05D009850 5.9e-11 70.5 46 63.0
MBI15_g00878_MAGBIO Magnolia biondii HOM05D007771 ORTHO05D009850 5.9e-11 70.5 69 56.5
Sopen07g034140 Solanum pennellii HOM05D007771 ORTHO05D009850 5.9e-11 70.5 67 53.7
COL.COLO4_07761 Corchorus olitorius HOM05D007771 ORTHO05D009850 7.7e-11 70.1 54 59.3
Potri.007G107500 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.0e-10 69.7 65 55.4
Gohir.A04G003000 Gossypium hirsutum HOM05D007771 ORTHO05D009850 1.3e-10 69.3 58 56.9
Gorai.009G453400 Gossypium raimondii HOM05D007771 ORTHO05D009850 1.3e-10 69.3 58 56.9
TPR.G1243 Trifolium pratense HOM05D007771 ORTHO05D009850 1.3e-10 69.3 59 59.3
Potri.011G166250 Populus trichocarpa HOM05D007771 ORTHO05D009850 3.8e-10 67.8 74 56.8
PGSC0003DMG400022153 Solanum tuberosum HOM05D007771 ORTHO05D009850 3.8e-10 67.8 43 67.4
Sed0026400 Sechium edule HOM05D007771 ORTHO05D009850 5.0e-10 67.4 65 52.3
Manes.05G206300 Manihot esculenta HOM05D007771 ORTHO05D009850 6.5e-10 67.0 43 69.8
TAR627G1191 Trochodendron aralioides HOM05D007771 ORTHO05D009850 6.5e-10 67.0 68 55.9
Migut.H01728 Erythranthe guttata HOM05D007771 ORTHO05D009850 1.1e-09 66.2 65 53.8
PGR083G2136 Punica granatum HOM05D007771 ORTHO05D009850 1.1e-09 66.2 68 54.4
Lalb_Chr17g0349031 Lupinus albus HOM05D007771 ORTHO05D009850 1.9e-09 65.5 67 56.7
RcHm_v2.0_Chr5g0075191 Rosa chinensis HOM05D007771 ORTHO05D009850 2.5e-09 65.1 64 54.7
PGSC0003DMG400014434 Solanum tuberosum HOM05D007771 ORTHO05D009850 2.5e-09 65.1 40 65.0
EL10Ac4g07508 Beta vulgaris HOM05D007771 ORTHO05D009850 5.5e-09 63.9 48 56.2
CANSAT11G2411 Cannabis sativa HOM05D007771 ORTHO05D009850 5.5e-09 63.9 41 68.3
Medtr5g096760 Medicago truncatula HOM05D007771 ORTHO05D009850 7.2e-09 63.5 63 54.0
Atru.chr2.3846 Acer truncatum HOM05D007771 ORTHO05D009850 9.4e-09 63.2 70 51.4
FAN11G2649 Fragaria x ananassa HOM05D007771 ORTHO05D009850 9.4e-09 63.2 40 72.5
Solyc07g065940.1 Solanum lycopersicum HOM05D007771 ORTHO05D009850 1.2e-08 62.8 61 50.8
Ciclev10010110m.g Citrus clementina HOM05D007771 ORTHO05D009850 1.6e-08 62.4 69 52.2
CAN.G623.52 Capsicum annuum HOM05D007771 ORTHO05D009850 3.6e-08 61.2 37 75.7
Gorai.013G149400 Gossypium raimondii HOM05D007771 ORTHO05D009850 3.6e-08 61.2 68 55.9
Gohir.A13G130128 Gossypium hirsutum HOM05D007771 ORTHO05D009850 4.7e-08 60.8 68 55.9
Gohir.D13G133100 Gossypium hirsutum HOM05D007771 ORTHO05D009850 4.7e-08 60.8 69 53.6
Nn1g08434 Nelumbo nucifera HOM05D007771 ORTHO05D009850 4.0e-07 57.8 69 47.8
EL10Ac4g09984 Beta vulgaris HOM05D007771 ORTHO05D009850 5.2e-07 57.4 36 77.8
DCAR_013772 Daucus carota HOM05D007771 ORTHO05D009850 6.7e-07 57.0 41 63.4
Zm00001eb316200 Zea mays HOM05D007771 ORTHO05D009850 1.5e-06 55.8 67 47.8


User provided reference genes

Program Settings