Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 8.4e-52 206.8 112 100.0
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 3.1e-46 188.3 114 91.2
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.1e-42 175.6 110 84.5
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 2.2e-39 165.6 111 82.0
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 6.3e-39 164.1 110 81.8
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 1.4e-38 162.9 110 81.8
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 7.7e-37 157.1 111 78.4
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 1.7e-36 156.0 111 77.5
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 1.7e-36 156.0 111 77.5
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 1.7e-36 156.0 111 77.5
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 1.7e-36 156.0 111 77.5
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 6.5e-36 154.1 110 77.3
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 1.2e-34 149.8 111 75.7
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 2.6e-32 142.1 116 68.1
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 1.7e-31 139.4 97 76.3
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 6.7e-25 117.5 87 70.1
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 8.5e-20 100.5 121 57.9
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 9.4e-11 70.5 109 43.1
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 2.7e-10 68.9 102 47.1
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.0e-09 67.0 101 40.6
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.8e-09 66.2 59 59.3
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 3.0e-09 65.5 52 63.5
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 4.0e-09 65.1 56 55.4
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 5.2e-09 64.7 95 43.2
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 5.2e-09 64.7 85 48.2
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 6.8e-09 64.3 85 43.5
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 6.8e-09 64.3 107 41.1
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 6.8e-09 64.3 49 61.2
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.2e-08 63.5 84 46.4
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 1.2e-08 63.5 52 63.5
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 1.2e-08 63.5 49 69.4
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.6e-08 62.4 85 48.2
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.6e-08 62.4 85 48.2
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 3.4e-08 62.0 108 38.9
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 3.4e-08 62.0 74 52.7
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 3.4e-08 62.0 46 67.4
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 5.7e-08 61.2 84 45.2
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 5.7e-08 61.2 110 43.6
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 7.5e-08 60.8 56 62.5
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 7.5e-08 60.8 53 60.4
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 7.5e-08 60.8 90 43.3
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 9.8e-08 60.5 103 37.9
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 9.8e-08 60.5 79 44.3
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 9.8e-08 60.5 95 43.2
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 9.8e-08 60.5 105 43.8
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 1.3e-07 60.1 84 44.0
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 1.3e-07 60.1 89 42.7
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.3e-07 60.1 54 59.3
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 1.3e-07 60.1 47 68.1
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 1.3e-07 60.1 52 59.6
C05p54700 Brassica napus HOM05D003402 ORTHO05D003939 1.7e-07 59.7 49 73.5
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 1.7e-07 59.7 48 60.4
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 1.7e-07 59.7 56 62.5
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.2e-07 59.3 52 59.6
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.2e-07 59.3 81 44.4
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.2e-07 59.3 54 59.3
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 2.2e-07 59.3 54 59.3
BraA05t22435Z Brassica rapa HOM05D003402 ORTHO05D003939 2.8e-07 58.9 51 70.6
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.8e-07 58.9 45 66.7
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 2.8e-07 58.9 52 59.6
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 2.8e-07 58.9 75 45.3
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 2.8e-07 58.9 51 60.8
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 2.8e-07 58.9 51 60.8
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 2.8e-07 58.9 52 57.7
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 2.8e-07 58.9 108 37.0
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 3.7e-07 58.5 96 39.6
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 3.7e-07 58.5 90 41.1
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 4.8e-07 58.2 56 55.4
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 4.8e-07 58.2 54 53.7
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 4.8e-07 58.2 46 60.9
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 6.3e-07 57.8 49 65.3
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 6.3e-07 57.8 95 40.0
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 6.3e-07 57.8 88 42.0
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 6.3e-07 57.8 54 53.7
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 6.3e-07 57.8 106 38.7
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 6.3e-07 57.8 106 38.7
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 8.3e-07 57.4 103 38.8
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 1.1e-06 57.0 102 39.2
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.1e-06 57.0 59 55.9
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 1.1e-06 57.0 56 57.1
A05p36350 Brassica napus HOM05D003402 ORTHO05D003939 1.4e-06 56.6 53 66.0
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 1.4e-06 56.6 80 43.8
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 1.4e-06 56.6 59 55.9
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.4e-06 56.6 59 55.9
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 1.4e-06 56.6 59 55.9
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.4e-06 56.6 59 55.9
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.8e-06 56.2 53 50.9
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 1.8e-06 56.2 103 36.9
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 1.8e-06 56.2 103 37.9
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.8e-06 56.2 81 40.7
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 2.4e-06 55.8 57 52.6
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 2.4e-06 55.8 91 41.8
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 2.4e-06 55.8 112 39.3
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 2.4e-06 55.8 47 51.1
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 3.1e-06 55.5 46 60.9
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 3.1e-06 55.5 103 41.7
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 4.1e-06 55.1 92 39.1
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 4.1e-06 55.1 103 35.0
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 4.1e-06 55.1 58 50.0
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 5.4e-06 54.7 46 58.7
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 7.0e-06 54.3 104 40.4
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 7.0e-06 54.3 96 38.5
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 7.0e-06 54.3 45 51.1
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 9.1e-06 53.9 103 39.8
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 9.1e-06 53.9 55 52.7
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 9.1e-06 53.9 55 52.7
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 9.1e-06 53.9 53 56.6
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 9.1e-06 53.9 50 46.0


User provided reference genes

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