Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G13140 Arabidopsis thaliana HOM05D009601 ORTHO05D010009 2.2e-105 385.6 184 100.0
AL3G24880 Arabidopsis lyrata HOM05D009601 ORTHO05D010009 3.1e-91 338.6 184 87.0
Carub.0003s1248 Capsella rubella HOM05D009601 ORTHO05D010009 3.5e-71 271.9 187 75.4
Aa31LG8G340 Aethionema arabicum HOM05D009601 ORTHO05D010009 9.9e-58 227.3 187 63.1
CARHR087730 Cardamine hirsuta HOM05D009601 ORTHO05D010009 5.1e-46 188.3 179 56.4
Sp3g11310 Schrenkiella parvula HOM05D009601 ORTHO05D010009 2.2e-41 172.9 186 50.0
THA.LOC104822732 Tarenaya hassleriana HOM05D009601 ORTHO05D010009 2.7e-39 166.0 170 52.4
BraA05t22440Z Brassica rapa HOM05D009601 ORTHO05D010009 1.8e-38 163.3 173 46.8
Thhalv10022260m.g Eutrema salsugineum HOM05D009601 ORTHO05D010009 5.1e-38 161.8 225 43.6
BolC5t34152H Brassica oleracea HOM05D009601 ORTHO05D010009 5.7e-37 158.3 171 46.2
BcaC05g29207 Brassica carinata HOM05D009601 ORTHO05D010009 4.8e-36 155.2 171 45.6
A05p36400 Brassica napus HOM05D009601 ORTHO05D010009 5.3e-35 151.8 199 41.2
C05p54800 Brassica napus HOM05D009601 ORTHO05D010009 1.4e-32 143.7 197 40.1
BolC1t05143H Brassica oleracea HOM05D009601 ORTHO05D010009 9.3e-32 141.0 187 45.5
BcaB06g25484 Brassica carinata HOM05D009601 ORTHO05D010009 1.5e-29 133.7 174 40.8
C01p51950 Brassica napus HOM05D009601 ORTHO05D010009 1.9e-29 133.3 187 43.9
A01p40410 Brassica napus HOM05D009601 ORTHO05D010009 1.1e-24 117.5 187 39.6
BraA01t04076Z Brassica rapa HOM05D009601 ORTHO05D010009 1.1e-24 117.5 187 39.6
Haze_09809 Corylus avellana HOM05D009601 ORTHO05D010009 1.1e-19 100.9 138 40.6
QL08p004697 Quercus lobata HOM05D009601 ORTHO05D010009 5.9e-18 95.1 112 42.9
Lj1g0010998 Lotus japonicus HOM05D000520 ORTHO05D010009 6.5e-17 91.7 121 39.7
Gohir.D05G383150 Gossypium hirsutum HOM05D009601 ORTHO05D010009 3.2e-16 89.4 131 39.7
Gorai.009G449700 Gossypium raimondii HOM05D009601 ORTHO05D010009 3.2e-16 89.4 131 39.7
MD03G1184800 Malus domestica HOM05D000520 ORTHO05D010009 4.2e-16 89.0 152 37.5
CiPaw.12G137200 Carya illinoinensis HOM05D000520 ORTHO05D010009 5.5e-16 88.6 88 46.6
Gohir.A04G006350 Gossypium hirsutum HOM05D009601 ORTHO05D010009 9.4e-16 87.8 139 38.1
QL08p004668 Quercus lobata HOM05D000017 ORTHO05D010009 9.4e-16 87.8 120 42.5
MELO3C014100.2 Cucumis melo HOM05D000520 ORTHO05D010009 5.1e-14 82.0 124 34.7
ClCG00G005810 Citrullus lanatus HOM05D000520 ORTHO05D010009 5.7e-13 78.6 129 34.9
ClCG10G004210 Citrullus lanatus HOM05D000520 ORTHO05D010009 5.7e-13 78.6 129 34.9
ClCG10G004240 Citrullus lanatus HOM05D000520 ORTHO05D010009 5.7e-13 78.6 129 34.9
Potri.001G366600 Populus trichocarpa HOM05D009601 ORTHO05D010009 1.7e-12 77.0 130 35.4
HanXRQChr05g0161851 Helianthus annuus HOM05D001458 ORTHO05D007170 5.3e-11 72.0 185 30.3
HanXRQChr05g0161871 Helianthus annuus HOM05D001458 ORTHO05D007170 5.3e-11 72.0 185 30.3
RcHm_v2.0_Chr5g0053851 Rosa chinensis HOM05D000520 ORTHO05D010009 5.3e-11 72.0 125 34.4
Oeu016650.1 Olea europaea HOM05D000520 ORTHO05D010009 3.5e-10 69.3 87 36.8
Dinv40848 Davidia involucrata HOM05D001458 ORTHO05D007170 1.7e-09 67.0 175 28.6
HanXRQChr05g0161861 Helianthus annuus HOM05D001458 ORTHO05D007170 1.1e-08 64.3 180 29.4
Rhsim04G0013200 Rhododendron simsii HOM05D001458 ORTHO05D007170 1.1e-08 64.3 83 32.5
Peaxi162Scf00689g00524 Petunia axillaris HOM05D000520 ORTHO05D010009 1.5e-08 63.9 189 27.5
Dinv28240 Davidia involucrata HOM05D000520 ORTHO05D010009 5.5e-08 62.0 138 31.2
Migut.H01762 Erythranthe guttata HOM05D000520 ORTHO05D010009 7.2e-08 61.6 134 31.3
Dinv10323 Davidia involucrata HOM05D003514 ORTHO05D004280 9.4e-08 61.2 171 29.2
Peaxi162Scf00104g00332 Petunia axillaris HOM05D000520 ORTHO05D010009 1.6e-07 60.5 131 29.8
Actinidia30414 Actinidia chinensis HOM05D000520 ORTHO05D010009 2.7e-07 59.7 70 34.3
Thecc.07G015700 Theobroma cacao HOM05D009601 ORTHO05D010009 3.6e-07 59.3 68 36.8
BcaB04g21045 Brassica carinata HOM05D009601 ORTHO05D010009 6.1e-07 58.5 147 35.4
SGA_v2.0_scaffold106G30570 Striga asiatica HOM05D000520 ORTHO05D010009 1.0e-06 57.8 71 33.8
Peaxi162Scf00684g00115 Petunia axillaris HOM05D000520 ORTHO05D010009 1.4e-06 57.4 126 27.8
Sopen09g026390 Solanum pennellii HOM05D000520 ORTHO05D010009 1.4e-06 57.4 81 28.4
Solyc06g008950.2 Solanum lycopersicum HOM05D000520 ORTHO05D010009 3.0e-06 56.2 160 31.9
Solyc09g064730.3 Solanum lycopersicum HOM05D000520 ORTHO05D010009 3.0e-06 56.2 95 29.5
Ah.04g159770 Amaranthus hybridus HOM05D000520 ORTHO05D000399 4.0e-06 55.8 69 30.4
CAN.G962.9 Capsicum annuum HOM05D000520 ORTHO05D010009 6.7e-06 55.1 74 28.4
Oeu064610.1 Olea europaea HOM05D000520 ORTHO05D010009 6.7e-06 55.1 142 28.9


User provided reference genes

Program Settings