Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G12960 Arabidopsis thaliana HOM05D007991 ORTHO05D010158 1.7e-39 165.6 87 100.0
Carub.0003s1230 Capsella rubella HOM05D007991 ORTHO05D010158 4.0e-33 144.4 87 86.2
Sp3g11110 Schrenkiella parvula HOM05D007991 ORTHO05D010158 1.7e-31 139.0 89 84.3
BcaC09g48284 Brassica carinata HOM05D007991 ORTHO05D010158 4.9e-31 137.5 89 82.0
C01p52180 Brassica napus HOM05D007991 ORTHO05D010158 4.9e-31 137.5 89 82.0
BolC1t05158H Brassica oleracea HOM05D007991 ORTHO05D010158 4.9e-31 137.5 89 82.0
CARHR087490 Cardamine hirsuta HOM05D007991 ORTHO05D010158 3.2e-30 134.8 88 80.7
BraA01t04089Z Brassica rapa HOM05D007991 ORTHO05D010158 4.1e-30 134.4 89 80.9
BcaB04g21024 Brassica carinata HOM05D007991 ORTHO05D010158 5.4e-30 134.0 89 80.9
Thhalv10022193m.g Eutrema salsugineum HOM05D007991 ORTHO05D010158 3.0e-28 128.3 90 80.0
AL3G24640 Arabidopsis lyrata HOM05D007991 ORTHO05D010158 1.3e-23 112.8 61 95.1
Medtr2g069650 Medicago truncatula HOM05D007991 ORTHO05D010158 3.2e-22 108.2 87 67.8
TPR.G9765 Trifolium pratense HOM05D007991 ORTHO05D010158 5.1e-20 100.9 79 65.8
Aa31LG8G190 Aethionema arabicum HOM05D007991 ORTHO05D010158 1.9e-19 99.0 78 65.4
MD05G1219200 Malus domestica HOM05D007991 ORTHO05D010158 3.6e-18 94.7 86 58.1
Ciclev10023629m.g Citrus clementina HOM05D007991 ORTHO05D010158 6.2e-18 94.0 85 58.8
Ah.07g206310 Amaranthus hybridus HOM05D007991 ORTHO05D010158 1.1e-17 93.2 74 66.2
Ca_03685_v3 Cicer arietinum L. HOM05D007991 ORTHO05D010158 1.1e-17 93.2 78 65.4
Lalb_Chr19g0133391 Lupinus albus HOM05D007991 ORTHO05D010158 1.1e-17 93.2 75 60.0
GSVIVG01012568001 Vitis vinifera HOM05D007991 ORTHO05D010158 4.0e-17 91.3 87 60.9
Glyma.08G172800 Glycine max HOM05D007991 ORTHO05D010158 5.2e-17 90.9 77 59.7
Prupe.4G140900 Prunus persica HOM05D007991 ORTHO05D010158 5.2e-17 90.9 57 75.4
Aqoxy6G00820 Aquilegia oxysepala HOM05D007991 ORTHO05D010158 6.8e-17 90.5 77 59.7
Cpa.g.sc10.36 Carica papaya HOM05D007991 ORTHO05D010158 8.9e-17 90.1 59 74.6
Manes.06G170901 Manihot esculenta HOM05D007991 ORTHO05D010158 1.5e-16 89.4 68 69.1
GSVIVG01035227001 Vitis vinifera HOM05D007991 ORTHO05D010158 1.5e-16 89.4 78 65.4
Manes.06G170500 Manihot esculenta HOM05D007991 ORTHO05D010158 2.0e-16 89.0 70 67.1
Lj3g0014492 Lotus japonicus HOM05D007991 ORTHO05D010158 4.4e-16 87.8 67 67.2
PGR042G3415 Punica granatum HOM05D007991 ORTHO05D010158 4.4e-16 87.8 55 76.4
RcHm_v2.0_Chr5g0026701 Rosa chinensis HOM05D007991 ORTHO05D010158 4.4e-16 87.8 84 57.1
Gohir.A11G002600 Gossypium hirsutum HOM05D007991 ORTHO05D010158 5.8e-16 87.4 54 75.9
TWI39G0184 Tripterygium wilfordii HOM05D007991 ORTHO05D010158 7.6e-16 87.0 55 74.5
Lsat_1_v5_gn_7_112301 Lactuca sativa HOM05D007991 ORTHO05D010158 9.9e-16 86.7 53 79.2
Nn7g37867 Nelumbo nucifera HOM05D007991 ORTHO05D010158 9.9e-16 86.7 78 60.3
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.3e-15 86.3 68 64.7
ECA236G0423 Erigeron canadensis HOM05D007991 ORTHO05D010158 1.3e-15 86.3 59 71.2
Cfa019429 Carpinus fangiana HOM05D007991 ORTHO05D010158 1.7e-15 85.9 50 80.0
Psat1g011440 Pisum sativum HOM05D007991 ORTHO05D010158 1.7e-15 85.9 58 70.7
CANSAT80G1088 Cannabis sativa HOM05D007991 ORTHO05D010158 2.2e-15 85.5 85 52.9
COL.COLO4_04148 Corchorus olitorius HOM05D007991 ORTHO05D010158 2.9e-15 85.1 53 75.5
Gorai.007G003200 Gossypium raimondii HOM05D007991 ORTHO05D010158 2.9e-15 85.1 54 74.1
Peaxi162Scf00452g00812 Petunia axillaris HOM05D007991 ORTHO05D010158 2.9e-15 85.1 55 74.5
Atru.chr8.1056 Acer truncatum HOM05D007991 ORTHO05D010158 4.9e-15 84.3 74 60.8
COL.COLO4_28875 Corchorus olitorius HOM05D007991 ORTHO05D010158 4.9e-15 84.3 83 55.4
MBI02_g12653_MAGBIO Magnolia biondii HOM05D007991 ORTHO05D010158 4.9e-15 84.3 69 62.3
Lalb_Chr03g0031611 Lupinus albus HOM05D007991 ORTHO05D010158 6.4e-15 84.0 53 73.6
QL04p074011 Quercus lobata HOM05D007991 ORTHO05D010158 6.4e-15 84.0 53 77.4
FAN16G1552 Fragaria x ananassa HOM05D007991 ORTHO05D010158 8.4e-15 83.6 77 58.4
Gohir.D11G002200 Gossypium hirsutum HOM05D007991 ORTHO05D010158 8.4e-15 83.6 54 72.2
CiPaw.04G012700 Carya illinoinensis HOM05D007991 ORTHO05D010158 1.4e-14 82.8 88 53.4
FAN25G2658 Fragaria x ananassa HOM05D007991 ORTHO05D010158 1.4e-14 82.8 77 58.4
HanXRQChr11g0334671 Helianthus annuus HOM05D007991 ORTHO05D010158 1.4e-14 82.8 59 69.5
Solyc07g066400.1 Solanum lycopersicum HOM05D007991 ORTHO05D010158 1.4e-14 82.8 54 72.2
EL10Ac4g08566 Beta vulgaris HOM05D007991 ORTHO05D010158 1.9e-14 82.4 74 59.5
ClCG11G016360 Citrullus lanatus HOM05D007991 ORTHO05D010158 2.4e-14 82.0 90 54.4
ClCG11G016370 Citrullus lanatus HOM05D007991 ORTHO05D010158 2.4e-14 82.0 90 54.4
PGSC0003DMG400022239 Solanum tuberosum HOM05D007991 ORTHO05D010158 2.4e-14 82.0 54 72.2
MELO3C010561.2 Cucumis melo HOM05D007991 ORTHO05D010158 3.2e-14 81.6 66 65.2
CAN.G943.33 Capsicum annuum HOM05D007991 ORTHO05D010158 4.2e-14 81.3 54 70.4
FAN11G2864 Fragaria x ananassa HOM05D007991 ORTHO05D010158 4.2e-14 81.3 77 57.1
FAN21G1902 Fragaria x ananassa HOM05D007991 ORTHO05D010158 4.2e-14 81.3 77 57.1
Sopen07g034570 Solanum pennellii HOM05D007991 ORTHO05D010158 7.1e-14 80.5 54 72.2
Phvul.005G056100 Phaseolus vulgaris HOM05D007991 ORTHO05D010158 1.2e-13 79.7 61 60.7
Sc16g0005380 Simmondsia chinensis HOM05D007991 ORTHO05D010158 1.2e-13 79.7 72 58.3
Duzib205G1447 Durio zibethinus HOM05D007991 ORTHO05D010158 3.0e-12 75.1 51 66.7
MD05G1300500 Malus domestica HOM05D007991 ORTHO05D010158 5.1e-12 74.3 48 75.0
PSO675G0275 Papaver somniferum HOM05D007991 ORTHO05D010158 1.9e-11 72.4 68 58.8
Nn4g23994 Nelumbo nucifera HOM05D007991 ORTHO05D010158 2.5e-11 72.0 77 54.5
unitig_8.g4768 Utricularia gibba HOM05D007991 ORTHO05D010158 2.5e-11 72.0 59 66.1
Sed0025657 Sechium edule HOM05D007991 ORTHO05D010158 4.3e-11 71.2 71 57.7
Nitab4.5_0008437g0010 Nicotiana tabacum HOM05D007991 ORTHO05D010158 5.6e-11 70.9 81 51.9
SalBow2G0434 Salvia bowleyana HOM05D007991 ORTHO05D010158 7.3e-11 70.5 59 61.0
CSS0001388 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 1.3e-10 69.7 69 56.5
CSS0033446 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 1.1e-09 66.6 57 59.6
Os08g0104400 Oryza sativa ssp. japonica HOM05D007991 ORTHO05D010158 2.2e-07 58.9 63 44.4
Zm00001eb260130 Zea mays HOM05D007991 ORTHO05D010158 5.4e-06 54.3 65 44.6


User provided reference genes

Program Settings