Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G12850 Arabidopsis thaliana HOM05D061468 ORTHO05D038599 4.8e-213 744.2 368 100.0
AL3G24520 Arabidopsis lyrata HOM05D061468 ORTHO05D038599 2.2e-72 276.9 175 77.1
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 9.6e-20 102.1 373 24.9
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.6e-19 101.3 332 27.1
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.1e-18 98.6 365 25.2
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 1.1e-18 98.6 319 27.9
C06p27130 Brassica napus HOM05D003871 ORTHO05D004621 1.8e-18 97.8 325 26.8
A07p25320 Brassica napus HOM05D003871 ORTHO05D004621 2.4e-18 97.4 330 25.8
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 3.1e-18 97.1 329 27.7
BolC6t37886H Brassica oleracea HOM05D003871 ORTHO05D004621 4.0e-18 96.7 330 26.1
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 4.0e-18 96.7 313 27.2
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 5.3e-18 96.3 318 26.4
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 6.9e-18 95.9 326 27.0
BcaC08g45104 Brassica carinata HOM05D003871 ORTHO05D004621 6.9e-18 95.9 319 26.6
BcaB02g07388 Brassica carinata HOM05D003871 ORTHO05D004621 9.0e-18 95.5 319 26.6
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 9.0e-18 95.5 316 26.9
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 9.0e-18 95.5 320 26.9
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 1.5e-17 94.7 318 27.4
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 1.5e-17 94.7 313 26.8
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 1.5e-17 94.7 321 26.5
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 2.0e-17 94.4 365 24.7
CARHR171420 Cardamine hirsuta HOM05D003871 ORTHO05D004621 2.6e-17 94.0 313 26.2
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 2.6e-17 94.0 318 26.4
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 3.4e-17 93.6 318 25.8
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 3.4e-17 93.6 325 26.8
FAN10G4186 Fragaria x ananassa HOM05D003871 ORTHO05D004621 3.4e-17 93.6 325 26.8
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 3.4e-17 93.6 320 25.6
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 4.5e-17 93.2 321 27.4
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 5.8e-17 92.8 322 25.2
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 5.8e-17 92.8 317 25.9
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 7.6e-17 92.4 319 26.6
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 7.6e-17 92.4 306 27.1
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 9.9e-17 92.0 318 25.5
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 9.9e-17 92.0 365 24.1
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 1.3e-16 91.7 317 25.6
MD07G1127800 Malus domestica HOM05D003871 ORTHO05D004621 1.7e-16 91.3 314 27.1
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 1.7e-16 91.3 314 26.1
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 1.7e-16 91.3 314 25.8
QL08p050260 Quercus lobata HOM05D003871 ORTHO05D004621 1.7e-16 91.3 318 24.8
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 2.2e-16 90.9 315 25.1
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 2.2e-16 90.9 315 25.1
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 2.2e-16 90.9 317 26.2
Pp3c11_20980 Physcomitrium patens HOM05D003871 ORTHO05D004621 2.2e-16 90.9 365 26.0
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 2.2e-16 90.9 368 24.7
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 6.4e-16 89.4 324 25.0
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 6.4e-16 89.4 361 24.1
Eucgr.E00211 Eucalyptus grandis HOM05D003871 ORTHO05D004621 6.4e-16 89.4 318 26.1
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 8.4e-16 89.0 317 26.2
CANSAT56G3752 Cannabis sativa HOM05D003871 ORTHO05D004621 8.4e-16 89.0 313 26.8
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 8.4e-16 89.0 333 26.1
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 8.4e-16 89.0 333 26.1
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 1.1e-15 88.6 314 27.1
FAN03G3137 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.1e-15 88.6 333 25.8
Prupe.2G156700 Prunus persica HOM05D003871 ORTHO05D004621 1.4e-15 88.2 317 26.5
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 3.2e-15 87.0 322 24.2
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 3.2e-15 87.0 360 25.3
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 4.2e-15 86.7 361 24.7
Sc23g0003210 Simmondsia chinensis HOM05D003871 ORTHO05D004621 4.2e-15 86.7 314 25.8
Os03g0116500 Oryza sativa ssp. japonica HOM05D003871 ORTHO05D004621 5.5e-15 86.3 371 25.1
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 5.5e-15 86.3 314 25.8
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 7.1e-15 85.9 319 24.5
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 7.1e-15 85.9 298 25.8
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 7.1e-15 85.9 307 26.4
Medtr7g076160 Medicago truncatula HOM05D003871 ORTHO05D004621 7.1e-15 85.9 328 26.5
Psat3g113760 Pisum sativum HOM05D003871 ORTHO05D004621 7.1e-15 85.9 324 25.6
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 7.1e-15 85.9 326 26.1
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 7.1e-15 85.9 314 26.4
Zm00001eb001110 Zea mays HOM05D003871 ORTHO05D004621 7.1e-15 85.9 360 24.2
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 9.3e-15 85.5 317 25.6
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 9.3e-15 85.5 317 24.6
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 9.3e-15 85.5 318 26.7
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 9.3e-15 85.5 361 24.7
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 9.3e-15 85.5 314 25.8
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.2e-14 85.1 361 24.4
THA.LOC104802015 Tarenaya hassleriana HOM05D003871 ORTHO05D004621 1.2e-14 85.1 312 25.3
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 1.6e-14 84.7 317 25.6
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.6e-14 84.7 333 25.5
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 2.1e-14 84.3 360 25.0
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 2.1e-14 84.3 325 24.9
SGA_v2.0_scaffold153G37076 Striga asiatica HOM05D003871 ORTHO05D004621 2.7e-14 84.0 360 25.3
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 2.7e-14 84.0 316 24.7
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 3.5e-14 83.6 314 24.8
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 3.5e-14 83.6 317 25.2
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 3.5e-14 83.6 323 27.2
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 4.6e-14 83.2 325 24.6
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 4.6e-14 83.2 335 25.7
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 6.0e-14 82.8 313 24.3
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 7.9e-14 82.4 330 25.5
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 7.9e-14 82.4 313 24.3
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 7.9e-14 82.4 312 25.6
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 1.0e-13 82.0 313 24.3
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 1.0e-13 82.0 317 24.9
AUR62004300 Chenopodium quinoa HOM05D003871 ORTHO05D004621 2.3e-13 80.9 313 26.5
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 3.9e-13 80.1 312 25.6
DCAR_016001 Daucus carota HOM05D003871 ORTHO05D004621 5.1e-13 79.7 360 23.9
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 5.1e-13 79.7 317 24.0
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 6.7e-13 79.3 313 25.2
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 8.7e-13 79.0 317 24.9
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 8.7e-13 79.0 317 24.9
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 8.7e-13 79.0 312 25.3
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 1.1e-12 78.6 345 24.3
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 1.5e-12 78.2 313 24.3
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 1.5e-12 78.2 227 28.2
Mapoly0035s0029 Marchantia polymorpha HOM05D003871 ORTHO05D004621 1.9e-12 77.8 365 24.1
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 2.5e-12 77.4 306 26.1
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.3e-12 77.0 368 23.9
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.3e-12 77.0 368 23.9
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 3.3e-12 77.0 312 24.0
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 4.3e-12 76.6 373 24.1
MSTRG.20801 Avicennia marina HOM05D003871 ORTHO05D004621 5.6e-12 76.3 320 25.3
SMO365G0068 Selaginella moellendorffii HOM05D003871 ORTHO05D004621 5.6e-12 76.3 368 23.6
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 7.4e-12 75.9 321 24.0
RcHm_v2.0_Chr1g0352641 Rosa chinensis HOM05D003871 ORTHO05D004621 7.4e-12 75.9 238 27.7
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 9.6e-12 75.5 343 23.3
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 9.6e-12 75.5 313 24.0
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.6e-11 74.7 325 24.9
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 3.7e-11 73.6 325 24.3
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 5.3e-10 69.7 208 27.4
AUR62022749 Chenopodium quinoa HOM05D000087 ORTHO05D004621 9.0e-10 68.9 209 28.7
ClCG06G000070 Citrullus lanatus HOM05D002904 ORTHO05D003206 1.2e-09 68.6 81 44.4
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.5e-09 68.2 328 24.1
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 2.2e-08 64.3 137 32.1
Pp3c7_5660 Physcomitrium patens HOM05D003871 ORTHO05D004621 4.9e-08 63.2 214 28.0
AL3G13530 Arabidopsis lyrata HOM05D003871 ORTHO05D023606 8.4e-08 62.4 328 22.3
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 1.4e-07 61.6 104 39.4
Gohir.A05G281600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.9e-07 61.2 80 41.2
Zm00001eb403970 Zea mays HOM05D003871 ORTHO05D004621 3.2e-07 60.5 113 34.5
CSS0019666 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 9.3e-07 58.9 348 22.4
Gohir.A06G193200 Gossypium hirsutum HOM05D003871 ORTHO05D004621 9.3e-07 58.9 80 37.5
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.2e-06 58.5 113 31.0
AagrBONN_evm.TU.Sc2ySwM_362.2141 Anthoceros agrestis HOM05D003871 ORTHO05D004621 1.2e-06 58.5 303 22.4


User provided reference genes

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