Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 2247.6 1185 100.0
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 2203.7 1185 98.0
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 2161.0 1185 96.2
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 2137.8 1186 94.6
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 2124.7 1185 93.9
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 2095.5 1185 93.6
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 2087.4 1187 92.4
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 2070.0 1215 90.2
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 2069.7 1229 89.3
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 2067.7 1229 89.2
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 2067.7 1229 89.2
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 2060.8 1210 89.8
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 2010.3 1189 89.3
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1989.2 1175 89.4
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1984.5 1185 89.2
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1975.7 1175 89.1
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1935.6 1185 85.6
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1754.6 1164 81.7
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1578.1 1226 70.6
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1568.5 1251 68.7
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1554.3 1221 69.4
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1552.3 1221 69.3
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1544.6 1218 69.0
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1536.5 1253 67.8
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1506.1 1227 66.7
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1502.6 1211 68.6
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1501.9 1227 66.8
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1498.8 1211 68.5
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1497.6 1212 67.7
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1495.7 1227 66.7
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1490.7 1211 67.2
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1490.3 1228 67.0
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1487.6 1203 68.7
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1481.8 1217 66.7
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1480.7 1209 67.9
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1471.8 1217 66.7
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1467.2 1224 66.2
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1467.2 1217 67.1
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1464.9 1201 66.4
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1458.0 1216 66.0
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1456.4 1210 66.4
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1451.8 1210 66.7
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1443.3 1216 64.9
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1436.4 1199 65.4
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1434.9 1204 64.6
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1429.1 1153 67.2
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1428.7 1197 65.6
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1427.9 1222 65.1
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1427.2 1139 67.5
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1426.8 1206 65.0
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1426.4 1233 64.2
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1417.5 1193 64.6
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1414.4 1217 64.0
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1411.4 1207 64.9
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1404.0 1221 63.1
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1400.6 1216 63.0
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1397.9 1221 62.9
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1393.3 1217 63.4
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1392.9 1209 63.2
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1392.1 1209 63.0
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1391.7 1219 63.6
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1390.9 1221 62.7
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1390.9 1206 63.1
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1389.8 1193 64.6
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1387.5 1203 64.4
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1383.2 1191 64.1
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1383.2 1221 62.5
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1377.8 1191 64.2
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1375.5 1191 64.1
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1368.2 1225 62.9
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1368.2 1225 62.9
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1365.9 1218 64.0
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1363.6 1199 63.6
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1363.6 1217 61.7
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1359.0 1213 62.7
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1354.7 1222 61.5
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1352.8 1172 64.1
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1349.3 1143 64.0
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1348.6 1209 62.4
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1337.8 1176 63.0
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1336.6 1140 64.0
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1329.7 1217 60.7
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1326.6 1218 61.0
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1323.5 1348 57.9
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1317.8 1418 54.8
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1315.8 1151 64.6
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1312.7 1219 60.0
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1309.3 1241 60.0
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1308.5 1241 59.9
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1279.2 1153 61.5
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1275.0 1225 59.0
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1247.6 1146 61.8
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1194.9 1023 63.2
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1178.3 1197 56.3
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1155.2 1063 60.1
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1128.2 696 87.5
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1121.7 1121 56.0
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1121.3 1065 58.5
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1111.3 1181 56.2
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1085.9 1212 53.7
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 0.0e+00 1079.3 1203 53.7
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1078.2 671 85.4
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 7.3e-311 1070.8 822 70.7
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 2.1e-310 1069.3 980 60.9
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 1.7e-291 1006.5 1171 50.6
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 1.2e-284 983.8 1241 50.7
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 3.8e-275 952.2 1131 49.2
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 3.8e-259 899.0 770 64.0
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 2.4e-253 879.8 946 53.2
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 9.9e-252 874.4 681 68.3
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 1.4e-237 827.4 1264 43.0
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 5.3e-237 825.5 744 61.0
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 1.6e-225 787.3 1279 41.5
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.7e-225 785.8 665 64.5
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 9.7e-223 778.1 634 65.0
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 4.4e-215 752.7 585 70.4
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 5.0e-211 739.2 665 60.8
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 2.2e-203 713.8 615 63.4
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.8e-203 713.0 1156 41.2
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 1.9e-186 657.5 1124 39.1
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.7e-179 634.4 582 60.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 8.3e-166 589.0 520 62.1
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.3e-146 523.5 455 62.0
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.8e-145 520.0 454 63.2
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 4.6e-140 503.4 1520 29.5
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 3.4e-135 487.3 425 62.8
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 1.3e-131 475.3 387 69.3
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 1.6e-121 441.8 402 62.7
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 2.6e-106 391.3 260 79.6
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 3.1e-96 357.8 413 50.8
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 3.6e-92 344.4 484 47.1
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.2e-90 339.3 306 57.8
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 9.8e-90 336.3 350 56.0
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.3e-83 315.1 242 73.1
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.7e-81 307.8 266 59.4
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.1e-80 304.7 400 45.5
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.6e-76 292.4 278 54.3
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.9e-61 242.3 211 60.7
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.5e-58 232.6 202 62.4
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 8.1e-52 210.3 125 85.6
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 5.2e-51 207.6 182 59.9
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.6e-44 184.9 211 51.2
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.4e-43 182.2 209 51.2
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 6.8e-43 180.6 159 59.1
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.0e-42 179.1 204 52.0
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.4e-42 178.3 208 50.5
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 3.4e-42 178.3 166 63.9
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.4e-34 151.8 134 56.0
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.9e-34 150.2 172 50.0
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.8e-33 148.3 133 63.9
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.4e-33 147.1 131 55.7
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 2.4e-32 145.6 150 50.7
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 2.1e-31 142.5 130 55.4
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 6.9e-27 127.5 116 53.4
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.4e-24 119.0 119 54.6
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.5e-23 115.2 111 53.2
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.5e-21 109.0 235 35.3
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.8e-19 102.8 64 78.1
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.8e-19 102.8 101 64.4
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.4e-19 102.4 101 64.4
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 3.2e-16 92.0 57 82.5
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 4.2e-16 91.7 174 40.2
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 5.1e-14 84.7 64 65.6
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 8.2e-12 77.4 195 29.2
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 5.3e-11 74.7 110 50.9
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 4.5e-10 71.6 136 41.2
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 1.3e-09 70.1 103 48.5
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 5.0e-09 68.2 123 33.3
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 1.9e-08 66.2 83 42.2
BcaB04g18705 Brassica carinata HOM05D004065 ORTHO05D004806 1.0e-06 60.5 75 58.7
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 1.3e-06 60.1 79 54.4
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 8.7e-06 57.4 132 37.9


User provided reference genes

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