Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 8.0e-94 347.1 172 100.0
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 3.5e-89 331.6 172 95.9
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 2.5e-87 325.5 170 94.1
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 3.6e-86 321.6 168 93.5
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.8e-85 319.3 168 92.3
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 5.8e-84 314.3 172 88.4
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 5.8e-84 314.3 172 88.4
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 5.8e-84 314.3 172 88.4
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 7.5e-84 313.9 168 91.1
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 1.7e-83 312.8 172 87.8
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 4.9e-83 311.2 172 87.2
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 6.4e-83 310.8 172 87.2
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.4e-82 309.7 172 86.6
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 5.0e-80 301.2 168 85.1
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.2e-75 285.8 168 80.4
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.9e-50 203.0 146 65.1
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 3.2e-50 202.2 146 64.4
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.2e-49 200.3 146 63.7
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.6e-49 199.9 146 65.1
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.6e-49 199.9 146 63.7
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 6.0e-49 198.0 141 65.2
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 2.3e-48 196.1 146 63.7
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.0e-48 195.7 146 62.3
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 6.7e-48 194.5 141 63.8
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 6.7e-48 194.5 146 63.0
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 6.7e-48 194.5 141 63.8
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 8.7e-48 194.1 143 62.9
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 8.7e-48 194.1 143 62.9
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 8.7e-48 194.1 141 63.8
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 8.7e-48 194.1 146 61.6
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.1e-47 193.7 146 61.0
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 1.9e-47 193.0 141 63.1
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 1.9e-47 193.0 141 63.1
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.9e-47 193.0 141 63.1
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 1.9e-47 193.0 141 63.1
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 1.9e-47 193.0 141 63.1
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.9e-47 193.0 148 62.2
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.5e-47 192.6 146 63.0
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 3.3e-47 192.2 148 62.8
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 4.3e-47 191.8 146 62.3
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 7.4e-47 191.0 146 62.3
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 9.6e-47 190.7 140 63.6
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 9.6e-47 190.7 141 62.4
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 9.6e-47 190.7 146 62.3
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 1.6e-46 189.9 141 62.4
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 2.8e-46 189.1 143 62.2
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 3.7e-46 188.7 139 64.7
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 4.8e-46 188.3 139 65.5
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 8.1e-46 187.6 143 61.5
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 8.1e-46 187.6 146 60.3
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 1.1e-45 187.2 146 61.0
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.1e-45 187.2 146 59.6
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 1.8e-45 186.4 136 66.9
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 2.4e-45 186.0 139 63.3
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 2.4e-45 186.0 143 60.8
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 2.4e-45 186.0 136 64.7
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 2.4e-45 186.0 146 61.0
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 2.4e-45 186.0 146 61.0
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 3.1e-45 185.7 140 63.6
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 4.0e-45 185.3 146 60.3
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 5.3e-45 184.9 139 63.3
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 5.3e-45 184.9 146 59.6
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 6.9e-45 184.5 146 60.3
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 9.0e-45 184.1 146 58.2
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 2.6e-44 182.6 140 61.4
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 2.6e-44 182.6 143 60.1
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.4e-44 182.2 146 57.5
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.4e-44 182.2 146 60.3
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 4.5e-44 181.8 140 63.6
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 4.5e-44 181.8 139 61.2
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 5.8e-44 181.4 140 62.1
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 5.8e-44 181.4 139 61.9
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 5.8e-44 181.4 136 62.5
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 5.8e-44 181.4 136 62.5
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 7.6e-44 181.0 146 60.3
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 7.6e-44 181.0 146 60.3
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 9.9e-44 180.6 146 61.6
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.7e-43 179.9 140 62.9
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 2.2e-43 179.5 140 60.7
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.2e-43 179.5 146 59.6
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 2.2e-43 179.5 140 60.7
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 2.9e-43 179.1 140 62.1
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.9e-43 179.1 146 59.6
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 2.9e-43 179.1 146 59.6
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 2.9e-43 179.1 140 60.7
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.9e-43 179.1 144 58.3
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 3.8e-43 178.7 141 61.0
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 3.8e-43 178.7 138 60.9
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 6.4e-43 177.9 148 58.1
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 6.4e-43 177.9 133 62.4
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 6.4e-43 177.9 133 63.2
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 8.4e-43 177.6 141 59.6
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 8.4e-43 177.6 141 58.9
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 1.1e-42 177.2 136 61.8
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.4e-42 176.8 140 60.7
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 1.9e-42 176.4 148 57.4
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.4e-42 176.0 133 61.7
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 4.2e-42 175.3 139 59.7
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 4.2e-42 175.3 139 59.7
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 4.2e-42 175.3 140 59.3
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 5.5e-42 174.9 144 58.3
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 7.1e-42 174.5 139 59.7
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.2e-41 173.7 144 57.6
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.6e-41 173.3 136 61.0
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 2.1e-41 172.9 140 58.6
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 3.5e-41 172.2 142 59.2
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.6e-41 171.8 138 60.1
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 6.0e-41 171.4 148 58.1
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.0e-40 170.6 138 61.6
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 1.8e-40 169.9 140 59.3
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 2.3e-40 169.5 139 59.0
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 2.3e-40 169.5 143 57.3
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 6.7e-40 167.9 138 60.1
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.5e-39 166.8 138 59.4
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 1.9e-39 166.4 136 55.1
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.6e-38 163.3 142 54.2
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 2.1e-38 162.9 140 56.4
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 3.7e-38 162.2 142 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 6.2e-38 161.4 133 57.1
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.5e-36 155.2 140 52.9
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 7.6e-36 154.5 114 61.4
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 2.2e-35 152.9 133 57.1
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 2.7e-33 146.0 107 66.4
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 3.9e-32 142.1 159 46.5
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 9.7e-31 137.5 161 43.5
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 9.0e-29 131.0 174 40.8
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.5e-28 128.6 110 61.8
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 4.2e-26 122.1 149 43.6
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.9e-23 113.2 80 61.2
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.2e-22 109.8 143 42.7
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 4.1e-21 105.5 169 37.9
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.9e-20 101.7 143 39.2
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 7.7e-20 101.3 79 57.0
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.7e-19 100.1 131 43.5
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 2.5e-18 96.3 110 48.2
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.2e-18 95.9 144 37.5
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 2.7e-17 92.8 158 38.0
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 3.0e-16 89.4 133 33.8
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 5.1e-16 88.6 167 34.1
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 4.1e-13 79.0 71 49.3
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 9.1e-13 77.8 65 60.0
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.2e-12 77.4 104 41.3
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.3e-11 73.9 63 57.1
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.3e-11 73.9 67 53.7
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 4.2e-10 68.9 68 48.5
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.4e-07 58.2 84 39.3
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.4e-07 58.2 84 39.3
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 4.8e-06 55.5 80 37.5


User provided reference genes

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