Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G12345 Arabidopsis thaliana HOM05D007397 ORTHO05D009336 2.9e-97 358.6 187 100.0
AL3G23990 Arabidopsis lyrata HOM05D007397 ORTHO05D009336 2.7e-87 325.5 188 92.6
Carub.0003s1170 Capsella rubella HOM05D007397 ORTHO05D009336 3.5e-87 325.1 188 91.0
Sp3g10540 Schrenkiella parvula HOM05D007397 ORTHO05D009336 2.6e-82 308.9 187 85.0
CARHR086880 Cardamine hirsuta HOM05D007397 ORTHO05D009336 1.6e-79 299.7 187 85.0
Thhalv10021616m.g Eutrema salsugineum HOM05D007397 ORTHO05D009336 1.4e-78 296.6 187 85.6
Aa31sc153G60 Aethionema arabicum HOM05D007397 ORTHO05D009336 1.1e-72 276.9 187 78.6
C05p55480 Brassica napus HOM05D007397 ORTHO05D009336 3.2e-72 275.4 187 77.5
BolC5t34214H Brassica oleracea HOM05D007397 ORTHO05D009336 5.5e-72 274.6 187 77.0
A05p37050 Brassica napus HOM05D007397 ORTHO05D009336 9.4e-72 273.9 187 77.5
BcaB04g21083 Brassica carinata HOM05D007397 ORTHO05D009336 8.8e-70 267.3 195 74.9
BcaB04g21085 Brassica carinata HOM05D007397 ORTHO05D009336 8.8e-70 267.3 195 74.9
BcaC05g29269 Brassica carinata HOM05D007397 ORTHO05D009336 8.8e-70 267.3 187 76.5
BraA05t22502Z Brassica rapa HOM05D007397 ORTHO05D009336 3.3e-69 265.4 189 76.2
THA.LOC104827311 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 1.2e-63 246.9 192 70.8
THA.LOC104809886 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 2.4e-59 232.6 189 66.7
Cpa.g.sc1.304 Carica papaya HOM05D007397 ORTHO05D009336 1.6e-58 229.9 185 67.0
PGSC0003DMG400011470 Solanum tuberosum HOM05D007397 ORTHO05D009336 2.2e-49 199.5 180 62.8
Glyma.06G097000 Glycine max HOM05D007397 ORTHO05D009336 3.8e-49 198.7 175 60.0
Glyma.04G095200 Glycine max HOM05D007397 ORTHO05D009336 5.0e-49 198.4 189 55.0
CSS0023256 Camellia sinensis var. sinensis HOM05D007397 ORTHO05D009336 1.1e-48 197.2 191 62.3
GSVIVG01032626001 Vitis vinifera HOM05D007397 ORTHO05D009336 1.1e-48 197.2 188 55.9
CiPaw.01G279900 Carya illinoinensis HOM05D007397 ORTHO05D009336 2.5e-48 196.1 185 60.0
Sopen04g005370 Solanum pennellii HOM05D007397 ORTHO05D009336 5.5e-48 194.9 181 60.8
TWI38G1005 Tripterygium wilfordii HOM05D007397 ORTHO05D009336 1.2e-47 193.7 194 59.3
Phvul.009G036400 Phaseolus vulgaris HOM05D007397 ORTHO05D009336 2.1e-47 193.0 171 57.9
Aqoxy5G01687 Aquilegia oxysepala HOM05D007397 ORTHO05D009336 2.7e-47 192.6 181 60.2
Haze_16973 Corylus avellana HOM05D007397 ORTHO05D009336 3.6e-47 192.2 184 59.2
ClCG09G020320 Citrullus lanatus HOM05D007397 ORTHO05D009336 6.1e-47 191.4 148 63.5
MELO3C025487.2 Cucumis melo HOM05D007397 ORTHO05D009336 6.1e-47 191.4 145 65.5
CANSAT64G2695 Cannabis sativa HOM05D007397 ORTHO05D009336 1.0e-46 190.7 179 57.5
Solyc04g010190.1 Solanum lycopersicum HOM05D007397 ORTHO05D009336 1.0e-46 190.7 180 61.1
AUR62042666 Chenopodium quinoa HOM05D007397 ORTHO05D009336 3.0e-46 189.1 181 58.6
Cfa001558 Carpinus fangiana HOM05D007397 ORTHO05D009336 4.0e-46 188.7 183 58.5
Ca_11323_v3 Cicer arietinum L. HOM05D007397 ORTHO05D009336 4.0e-46 188.7 185 55.1
Hma1.2p1_0348F.1_g131665 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 1.5e-45 186.8 161 65.2
Hma1.2p1_0348F.1_g131670 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 1.5e-45 186.8 161 65.2
FAN03G3257 Fragaria x ananassa HOM05D007397 ORTHO05D009336 2.0e-45 186.4 179 59.8
Sabra08G0033900 Salix brachista HOM05D007397 ORTHO05D009336 2.0e-45 186.4 176 61.9
PGR142G1402 Punica granatum HOM05D007397 ORTHO05D009336 5.7e-45 184.9 183 56.3
Cc02_g08640 Coffea canephora HOM05D007397 ORTHO05D009336 9.8e-45 184.1 189 53.4
Migut.L01413 Erythranthe guttata HOM05D007397 ORTHO05D009336 2.8e-44 182.6 180 57.8
Oeu044824.1 Olea europaea HOM05D007397 ORTHO05D009336 2.8e-44 182.6 144 63.9
EL10Ac2g03499 Beta vulgaris HOM05D007397 ORTHO05D009336 3.7e-44 182.2 152 62.5
Gohir.D10G218000 Gossypium hirsutum HOM05D007397 ORTHO05D009336 3.7e-44 182.2 181 59.7
Lj1P929T40 Lonicera japonica HOM05D007397 ORTHO05D009336 3.7e-44 182.2 140 68.6
MBI05_g32638_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 4.9e-44 181.8 175 57.1
Actinidia38224 Actinidia chinensis HOM05D007397 ORTHO05D009336 8.3e-44 181.0 178 57.9
Medtr1g115740 Medicago truncatula HOM05D007397 ORTHO05D009336 8.3e-44 181.0 187 54.0
FAN01G1537 Fragaria x ananassa HOM05D007397 ORTHO05D009336 1.1e-43 180.6 179 58.7
FAN01G1406 Fragaria x ananassa HOM05D007397 ORTHO05D009336 1.4e-43 180.3 179 58.7
SGA_v2.0_scaffold165G38243 Striga asiatica HOM05D007397 ORTHO05D009336 1.4e-43 180.3 146 60.3
VMungo1309G1572 Vigna mungo HOM05D007397 ORTHO05D009336 1.4e-43 180.3 168 56.5
MD07G1184800 Malus domestica HOM05D007397 ORTHO05D009336 1.8e-43 179.9 186 56.5
CsaV3_5G026110 Cucumis sativus L. HOM05D007397 ORTHO05D009336 2.4e-43 179.5 172 56.4
Psat6g239080 Pisum sativum HOM05D007397 ORTHO05D009336 4.1e-43 178.7 188 54.3
Potri.010G213600 Populus trichocarpa HOM05D007397 ORTHO05D009336 4.1e-43 178.7 157 61.1
Prupe.2G224700 Prunus persica HOM05D007397 ORTHO05D009336 4.1e-43 178.7 187 55.1
DCAR_015250 Daucus carota HOM05D007397 ORTHO05D009336 7.0e-43 177.9 131 68.7
Lj5g0010768 Lotus japonicus HOM05D007397 ORTHO05D009336 9.1e-43 177.6 162 57.4
PSO339G5749 Papaver somniferum HOM05D007397 ORTHO05D009336 2.7e-42 176.0 189 54.0
TAR320G0002 Trochodendron aralioides HOM05D007397 ORTHO05D009336 2.7e-42 176.0 191 53.9
MSTRG.7898 Avicennia marina HOM05D007397 ORTHO05D009336 3.5e-42 175.6 180 54.4
PSO384G5114 Papaver somniferum HOM05D007397 ORTHO05D009336 3.5e-42 175.6 192 53.6
Dinv25942 Davidia involucrata HOM05D007397 ORTHO05D009336 5.9e-42 174.9 180 59.4
Potri.008G047800 Populus trichocarpa HOM05D007397 ORTHO05D009336 5.9e-42 174.9 176 57.4
Rhsim09G0155900 Rhododendron simsii HOM05D007397 ORTHO05D009336 5.9e-42 174.9 146 62.3
Thecc.10G062300 Theobroma cacao HOM05D007397 ORTHO05D009336 5.9e-42 174.9 187 56.1
Gorai.011G244600 Gossypium raimondii HOM05D007397 ORTHO05D009336 1.0e-41 174.1 182 57.7
Sed0011140 Sechium edule HOM05D007397 ORTHO05D009336 1.3e-41 173.7 151 61.6
HanXRQChr14g0460741 Helianthus annuus HOM05D007397 ORTHO05D009336 1.7e-41 173.3 125 67.2
SalBow2G2387 Salvia bowleyana HOM05D007397 ORTHO05D009336 1.7e-41 173.3 130 67.7
Nn2g12828 Nelumbo nucifera HOM05D007397 ORTHO05D009336 3.8e-41 172.2 150 59.3
Sc06g0001870 Simmondsia chinensis HOM05D007397 ORTHO05D009336 1.5e-40 170.2 171 56.7
ATR0681G332 Amborella trichopoda HOM05D007397 ORTHO05D009336 2.5e-40 169.5 191 52.9
Atru.chr12.591 Acer truncatum HOM05D007397 ORTHO05D009336 4.3e-40 168.7 181 55.2
QL08p057549 Quercus lobata HOM05D007397 ORTHO05D009336 4.3e-40 168.7 188 52.7
RcHm_v2.0_Chr1g0365021 Rosa chinensis HOM05D007397 ORTHO05D009336 2.8e-39 166.0 180 55.0
TPR.G10388 Trifolium pratense HOM05D007397 ORTHO05D009336 4.7e-39 165.2 184 52.7
CAN.G1557.1 Capsicum annuum HOM05D007397 ORTHO05D009336 1.8e-38 163.3 116 72.4
Gohir.A10G209700 Gossypium hirsutum HOM05D007397 ORTHO05D009336 3.0e-38 162.5 182 54.9
Nitab4.5_0007221g0040 Nicotiana tabacum HOM05D007397 ORTHO05D009336 6.8e-38 161.4 179 52.0
Lsat_1_v5_gn_2_115220 Lactuca sativa HOM05D005234 ORTHO05D006583 8.9e-38 161.0 180 52.2
AUR62025539 Chenopodium quinoa HOM05D007397 ORTHO05D009336 3.4e-37 159.1 178 54.5
Lalb_Chr06g0164111 Lupinus albus HOM05D007397 ORTHO05D009336 4.4e-37 158.7 163 54.6
HPP92_025097 Vanilla planifolia HOM05D007397 ORTHO05D009336 1.7e-36 156.8 193 47.2
FAN10G1155 Fragaria x ananassa HOM05D007397 ORTHO05D009336 2.4e-35 152.9 174 54.6
unitig_22.g6935 Utricularia gibba HOM05D007397 ORTHO05D009336 2.4e-35 152.9 183 50.8
CDE02G3908 Ceratophyllum demersum HOM05D001333 ORTHO05D001208 7.0e-35 151.4 153 52.3
MBI05_g30757_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 1.2e-34 150.6 150 57.3
COL.COLO4_37769 Corchorus olitorius HOM05D007397 ORTHO05D009336 8.6e-33 144.4 126 61.9
Manes.10G039600 Manihot esculenta HOM05D007397 ORTHO05D009336 7.3e-32 141.4 89 75.3
Duzib106G0993 Durio zibethinus HOM05D007397 ORTHO05D009336 9.5e-32 141.0 109 67.9
Peaxi162Scf00135g00025 Petunia axillaris HOM05D007397 ORTHO05D009336 1.2e-31 140.6 90 75.6
Ciclev10034008m.g Citrus clementina HOM05D007397 ORTHO05D009336 5.2e-30 135.2 88 73.9
SEGI_38306 Sequoiadendron giganteum HOM05D007397 ORTHO05D009336 2.6e-29 132.9 188 44.1
Mapoly0043s0078 Marchantia polymorpha HOM05D007397 ORTHO05D009336 1.7e-28 130.2 137 48.2
ECA238G2043 Erigeron canadensis HOM05D005234 ORTHO05D006583 4.9e-28 128.6 130 58.5
Nitab4.5_0006737g0020 Nicotiana tabacum HOM05D007397 ORTHO05D009336 2.7e-26 122.9 144 52.1
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 6.0e-26 121.7 137 46.0
Os06g0484500 Oryza sativa ssp. japonica HOM05D007397 ORTHO05D009336 4.0e-22 109.0 151 43.7
Zm00001eb397310 Zea mays HOM05D007397 ORTHO05D009336 3.7e-20 102.4 152 42.8
Cfa009156 Carpinus fangiana HOM05D007397 ORTHO05D009336 1.2e-18 97.4 127 48.8
C03p57580 Brassica napus HOM05D007397 ORTHO05D009336 1.6e-18 97.1 114 51.8
AagrBONN_evm.TU.Sc2ySwM_368.51 Anthoceros agrestis HOM05D007397 ORTHO05D009336 4.6e-18 95.5 79 57.0
BcaC03g17725 Brassica carinata HOM05D007397 ORTHO05D009336 3.0e-17 92.8 182 38.5
Duzib114G0919 Durio zibethinus HOM05D007397 ORTHO05D009336 2.8e-15 86.3 125 49.6


User provided reference genes

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