Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 4.2e-113 411.4 210 100.0
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 3.1e-108 395.2 211 95.3
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 1.6e-107 392.9 210 94.3
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 2.9e-106 388.7 208 94.2
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 2.1e-104 382.5 211 92.4
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 2.7e-99 365.5 210 88.1
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 7.7e-99 364.0 210 88.1
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 5.9e-91 337.8 211 83.4
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 5.0e-82 308.1 219 74.9
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 2.5e-81 305.8 169 89.9
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 7.3e-81 304.3 219 74.0
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 2.8e-80 302.4 215 72.6
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 4.7e-80 301.6 219 73.5
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 1.4e-79 300.1 219 73.1
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 3.1e-79 298.9 208 76.0
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 4.0e-79 298.5 218 72.9
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 8.9e-79 297.4 218 71.1
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 2.0e-78 296.2 216 69.4
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 7.5e-78 294.3 213 71.8
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 9.8e-78 293.9 212 71.2
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 1.3e-77 293.5 205 71.2
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 3.7e-77 292.0 216 70.4
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 4.9e-77 291.6 207 71.5
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 8.3e-77 290.8 208 70.7
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 8.3e-77 290.8 208 70.7
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 1.1e-76 290.4 213 70.9
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 1.4e-76 290.0 214 71.5
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 5.4e-76 288.1 208 69.7
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 1.6e-75 286.6 193 73.1
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 1.6e-75 286.6 215 70.2
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 6.0e-75 284.6 215 70.7
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 7.8e-75 284.3 204 70.6
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 1.3e-74 283.5 213 66.2
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 1.3e-74 283.5 215 67.9
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 1.7e-74 283.1 218 69.7
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 2.3e-74 282.7 235 64.3
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 3.9e-74 282.0 215 68.4
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 6.6e-74 281.2 223 67.7
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 6.6e-74 281.2 218 67.0
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 8.6e-74 280.8 208 67.3
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.1e-73 280.4 216 69.9
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 1.9e-73 279.6 217 67.7
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 1.9e-73 279.6 214 68.7
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 2.5e-73 279.3 212 69.3
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 3.3e-73 278.9 217 65.0
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 4.3e-73 278.5 203 70.4
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 4.3e-73 278.5 208 68.3
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 9.5e-73 277.3 193 71.0
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.6e-72 276.6 207 68.1
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 1.6e-72 276.6 212 68.9
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 2.1e-72 276.2 218 65.1
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 2.1e-72 276.2 219 67.1
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 2.8e-72 275.8 221 64.7
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 3.6e-72 275.4 211 68.7
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 6.2e-72 274.6 219 65.8
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 1.4e-71 273.5 201 69.7
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 1.8e-71 273.1 218 66.5
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 6.8e-71 271.2 220 65.9
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 1.2e-70 270.4 217 64.5
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 1.2e-70 270.4 204 66.2
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 1.5e-70 270.0 239 60.3
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 4.9e-69 265.0 203 66.0
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 8.3e-69 264.2 164 84.8
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 8.3e-69 264.2 219 66.7
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 8.3e-69 264.2 167 77.8
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 7.1e-68 261.2 193 69.4
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 9.2e-68 260.8 221 62.4
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 1.2e-67 260.4 167 77.8
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 2.1e-67 259.6 214 63.1
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 6.0e-67 258.1 211 63.5
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 7.8e-67 257.7 195 68.2
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 7.8e-67 257.7 167 76.6
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 7.8e-67 257.7 183 68.9
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 2.3e-66 256.1 218 64.7
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 3.9e-66 255.4 219 64.4
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 3.9e-66 255.4 217 61.8
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 8.6e-66 254.2 224 59.8
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 1.5e-65 253.4 211 62.1
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 2.5e-65 252.7 167 73.1
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 1.4e-63 246.9 182 68.7
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 6.8e-63 244.6 212 62.7
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 2.6e-62 242.7 179 67.0
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 7.6e-62 241.1 155 77.4
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 3.3e-57 225.7 137 88.3
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 9.6e-57 224.2 137 88.3
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 2.0e-54 216.5 214 58.4
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 5.4e-52 208.4 203 52.7
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 1.6e-51 206.8 212 55.7
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 3.0e-50 202.6 140 69.3
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 3.3e-49 199.1 153 69.9
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 6.4e-45 184.9 136 66.9
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 1.0e-42 177.6 154 66.2
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.2e-38 164.1 214 49.1
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 2.1e-32 143.3 95 80.0
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 4.3e-25 119.0 83 77.1
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 4.3e-25 119.0 83 77.1
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 1.3e-21 107.5 207 36.7
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 5.1e-18 95.5 59 76.3
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 3.7e-16 89.4 73 52.1
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 1.5e-14 84.0 60 70.0
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 3.8e-13 79.3 154 37.0
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 2.7e-11 73.2 78 55.1
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 8.8e-10 68.2 137 39.4
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 8.2e-08 61.6 37 81.1


User provided reference genes

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