Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.1e-102 376.7 197 100.0
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 2.0e-101 372.5 197 99.0
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 7.8e-101 370.5 197 98.5
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 7.8e-101 370.5 197 98.0
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 3.3e-99 365.2 197 98.0
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 3.3e-99 365.2 197 98.0
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 5.6e-99 364.4 197 97.0
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 7.3e-99 364.0 197 98.0
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 2.1e-98 362.5 197 96.4
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 3.6e-98 361.7 197 95.9
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 3.6e-98 361.7 198 96.0
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 4.7e-98 361.3 197 96.4
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 1.8e-97 359.4 197 95.9
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 2.3e-97 359.0 197 95.4
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 2.3e-97 359.0 197 95.4
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 6.8e-97 357.5 197 94.4
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 3.4e-96 355.1 197 93.9
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 3.2e-94 348.6 197 92.4
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 1.6e-90 336.3 197 88.8
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 3.7e-87 325.1 197 87.8
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 3.0e-84 315.5 197 84.8
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 6.6e-84 314.3 194 85.6
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 8.6e-84 313.9 194 84.0
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 4.3e-83 311.6 194 86.1
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 4.3e-83 311.6 194 86.1
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 4.3e-83 311.6 194 86.6
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 5.6e-83 311.2 197 84.3
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 9.5e-83 310.5 194 85.6
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 9.5e-83 310.5 194 83.0
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.6e-82 309.7 194 85.6
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 3.6e-82 308.5 191 84.8
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 6.2e-82 307.8 194 85.1
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 8.1e-82 307.4 194 84.5
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 1.4e-81 306.6 190 82.6
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 3.1e-81 305.4 194 83.5
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 4.0e-81 305.1 190 83.7
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 6.8e-81 304.3 197 82.7
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.5e-80 303.1 194 82.5
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 1.5e-80 303.1 191 82.2
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.0e-80 302.8 197 83.8
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 2.0e-80 302.8 190 83.7
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 2.6e-80 302.4 194 83.0
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 2.6e-80 302.4 190 83.2
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.6e-80 302.4 194 82.5
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.6e-80 302.4 194 82.5
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 2.6e-80 302.4 190 83.2
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 3.4e-80 302.0 194 84.5
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 3.4e-80 302.0 194 83.5
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 3.4e-80 302.0 190 83.2
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 3.4e-80 302.0 190 82.6
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 4.4e-80 301.6 191 83.2
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 5.8e-80 301.2 194 82.0
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 5.8e-80 301.2 190 83.2
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 5.8e-80 301.2 190 83.2
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 9.9e-80 300.4 190 82.1
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 3.7e-79 298.5 197 82.2
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 3.7e-79 298.5 194 80.9
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 3.7e-79 298.5 197 82.7
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 3.7e-79 298.5 194 82.5
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 4.9e-79 298.1 194 82.5
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 1.1e-78 297.0 195 77.9
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 1.1e-78 297.0 190 81.6
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 1.4e-78 296.6 194 83.0
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 1.9e-78 296.2 197 82.7
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 2.4e-78 295.8 197 79.2
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 2.4e-78 295.8 194 83.0
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 2.4e-78 295.8 191 82.2
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 7.1e-78 294.3 192 82.3
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 7.1e-78 294.3 194 80.9
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 9.2e-78 293.9 190 81.1
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 9.2e-78 293.9 190 81.1
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 9.2e-78 293.9 190 81.1
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 2.1e-77 292.7 190 81.6
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 6.0e-77 291.2 178 84.3
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 3.9e-76 288.5 194 82.0
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 1.1e-75 287.0 194 79.9
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 1.2e-74 283.5 197 78.2
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 2.8e-74 282.3 194 79.4
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 2.8e-74 282.3 194 79.4
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 4.7e-74 281.6 191 80.1
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 4.7e-74 281.6 195 77.4
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.8e-73 279.6 197 76.1
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 3.1e-73 278.9 191 79.6
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 5.2e-73 278.1 189 77.8
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 5.2e-73 278.1 197 76.1
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 5.2e-73 278.1 197 76.6
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 8.9e-73 277.3 190 80.0
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 4.4e-72 275.0 189 76.7
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 1.3e-71 273.5 197 74.6
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 1.7e-71 273.1 190 77.9
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 2.9e-71 272.3 197 75.1
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 4.9e-71 271.6 194 76.3
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 7.1e-70 267.7 188 74.5
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 1.6e-69 266.5 185 77.8
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 2.1e-69 266.2 198 70.7
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 2.7e-69 265.8 190 76.3
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 6.6e-68 261.2 189 75.1
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 6.6e-68 261.2 192 74.0
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 4.3e-67 258.5 175 80.0
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 2.4e-65 252.7 187 69.5
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 1.2e-64 250.4 186 69.9
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 6.4e-63 244.6 191 67.0
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 1.4e-62 243.4 198 70.2
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 2.4e-62 242.7 195 66.2
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 3.2e-62 242.3 186 67.7
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 3.2e-62 242.3 197 64.5
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 5.1e-60 235.0 205 61.5
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 1.1e-59 233.8 137 89.8
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 1.8e-57 226.5 137 86.9
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 2.4e-57 226.1 197 68.5
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 8.4e-55 217.6 186 59.1
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 5.4e-54 214.9 137 81.8
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 3.5e-53 212.2 199 62.8
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 6.9e-49 198.0 167 65.9
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.0e-48 196.4 190 61.6
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 3.7e-42 175.6 123 79.7
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.4e-41 173.7 203 54.2
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 2.2e-39 166.4 115 77.4
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 5.5e-38 161.8 122 71.3
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 1.0e-36 157.5 102 78.4
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 6.9e-33 144.8 166 45.2
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 1.6e-29 133.7 107 70.1
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 2.7e-29 132.9 135 57.8
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 8.8e-28 127.9 106 67.9
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 1.1e-27 127.5 97 69.1
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 2.5e-22 109.8 78 75.6
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 3.2e-22 109.4 75 82.7
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 9.7e-19 97.8 169 34.3
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 7.0e-17 91.7 79 68.4
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 2.9e-15 86.3 45 86.7
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 2.5e-14 83.2 162 32.7
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 1.4e-09 67.4 98 46.9
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 1.5e-06 57.4 54 66.7
SGA_v2.0_scaffold472G52090 Striga asiatica HOM05D005910 ORTHO05D007088 2.5e-06 56.6 54 66.7


User provided reference genes

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