Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.6e-94 348.2 173 100.0
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.4e-85 318.9 173 91.3
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.6e-79 297.0 174 86.2
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.3e-71 271.9 174 78.7
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 2.9e-67 258.8 173 73.4
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.4e-61 239.2 175 68.0
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.3e-59 233.4 173 67.1
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.4e-58 229.9 175 64.0
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.7e-56 221.1 171 66.7
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.6e-52 209.1 171 64.3
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.6e-52 207.6 171 63.7
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.2e-51 206.1 171 63.2
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.1e-50 203.8 171 59.1
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 1.1e-50 203.8 175 58.3
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 1.1e-50 203.8 175 58.3
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.2e-49 200.3 171 58.5
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.2e-49 200.3 178 60.1
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 5.1e-48 194.9 175 54.9
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 5.1e-48 194.9 175 54.9
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 5.1e-48 194.9 175 54.9
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 8.7e-48 194.1 175 56.0
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 8.7e-48 194.1 175 56.0
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 8.7e-48 194.1 175 56.0
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.5e-47 193.4 171 56.7
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.2e-46 189.5 175 62.9
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.4e-45 186.8 216 46.8
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 1.8e-45 186.4 160 58.8
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 1.8e-45 186.4 160 58.8
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 1.8e-45 186.4 160 58.8
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 1.8e-45 186.4 176 58.0
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 5.3e-45 184.9 168 56.0
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.2e-44 183.7 154 56.5
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 2.0e-44 183.0 160 58.1
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 2.0e-44 183.0 160 58.1
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 5.9e-44 181.4 160 56.9
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.0e-43 180.6 171 56.7
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 1.0e-43 180.6 160 56.9
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 1.0e-43 180.6 160 56.9
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 1.3e-43 180.3 163 55.8
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 2.2e-43 179.5 160 56.9
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 2.2e-43 179.5 174 53.4
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 2.2e-43 179.5 160 56.9
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 2.2e-43 179.5 160 56.9
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 2.9e-43 179.1 160 55.6
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 3.8e-43 178.7 160 56.2
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 3.8e-43 178.7 160 56.2
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 5.0e-43 178.3 166 54.8
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.2e-42 175.6 173 53.8
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.1e-41 172.9 171 53.8
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 2.5e-39 166.0 160 53.1
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 2.5e-39 166.0 160 53.1
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 2.2e-38 162.9 161 53.4
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 1.1e-37 160.6 161 52.2
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.8e-37 159.8 173 50.3
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 7.7e-36 154.5 146 51.4
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 6.7e-32 141.4 124 54.0
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 5.7e-31 138.3 155 47.7
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 7.0e-29 131.3 142 43.0
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 4.7e-25 118.6 159 42.8
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.1e-25 118.2 121 43.8
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 6.1e-25 118.2 119 45.4
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.8e-24 116.7 171 38.0
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.8e-24 116.7 118 44.9
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.3e-24 116.3 125 45.6
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 3.0e-24 115.9 171 38.6
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 8.8e-24 114.4 171 35.7
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 1.1e-23 114.0 159 42.1
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 1.4e-21 107.1 84 56.0
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 7.7e-20 101.3 170 38.2
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 1.7e-19 100.1 96 47.9
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 5.5e-18 95.1 133 39.8
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 1.7e-14 83.6 110 36.4
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.4e-13 80.5 104 39.4
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 7.0e-13 78.2 50 60.0
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 2.0e-12 76.6 103 38.8
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 2.7e-12 76.3 129 34.1
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 3.5e-12 75.9 139 34.5
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 5.9e-12 75.1 107 38.3
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 1.0e-11 74.3 75 42.7
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 1.7e-11 73.6 76 36.8
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 1.7e-11 73.6 87 37.9
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 2.2e-11 73.2 106 34.0
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 5.0e-11 72.0 79 38.0
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.1e-10 70.9 114 34.2
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.1e-10 70.9 106 34.9
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.5e-10 70.5 99 31.3
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 1.5e-10 70.5 152 28.3
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 1.9e-10 70.1 135 30.4
Thecc.09G158400 Theobroma cacao HOM05D002073 ORTHO05D001803 1.9e-10 70.1 79 38.0
Eucgr.C00225 Eucalyptus grandis HOM05D008402 ORTHO05D009651 9.4e-10 67.8 82 32.9
Eucgr.C00226 Eucalyptus grandis HOM05D042140 ORTHO05D009651 1.2e-09 67.4 78 34.6
TPR.G36159 Trifolium pratense HOM05D010700 ORTHO05D012225 1.6e-09 67.0 80 40.0
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.1e-09 66.6 115 33.9
C05p55910 Brassica napus HOM05D007923 ORTHO05D009651 2.1e-09 66.6 67 53.7
BolC5t34259H Brassica oleracea HOM05D007923 ORTHO05D009651 2.1e-09 66.6 67 53.7
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.7e-09 66.2 127 32.3
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.7e-09 66.2 162 26.5
BcaC08g44685 Brassica carinata HOM05D007923 ORTHO05D009651 4.7e-09 65.5 69 53.6
Thhalv10005636m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 6.1e-09 65.1 116 30.2
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 8.0e-09 64.7 83 37.3
Medtr6g007660 Medicago truncatula HOM05D010700 ORTHO05D012225 8.0e-09 64.7 77 39.0
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.0e-08 64.3 104 32.7
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.4e-08 63.9 161 28.6
BcaC07g40200 Brassica carinata HOM05D007888 ORTHO05D009976 1.8e-08 63.5 135 31.1
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 2.3e-08 63.2 116 31.9
MD13G1274700 Malus domestica HOM05D025175 ORTHO05D009651 3.0e-08 62.8 170 29.4
Rhsim01G0015900 Rhododendron simsii HOM05D010700 ORTHO05D012225 3.0e-08 62.8 116 31.0
BolC1t05231H Brassica oleracea HOM05D007888 ORTHO05D009976 4.0e-08 62.4 134 26.9
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 5.2e-08 62.0 116 31.9
BolC1t05238H Brassica oleracea HOM05D007888 ORTHO05D009976 5.2e-08 62.0 126 29.4
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 6.8e-08 61.6 166 25.3
BcaC09g48231 Brassica carinata HOM05D007888 ORTHO05D009976 6.8e-08 61.6 126 30.2
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 6.8e-08 61.6 116 31.9
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 6.8e-08 61.6 109 32.1
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 6.8e-08 61.6 116 31.0
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 6.8e-08 61.6 109 32.1
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 8.8e-08 61.2 109 31.2
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 8.8e-08 61.2 130 27.7
BolC1t05244H Brassica oleracea HOM05D007888 ORTHO05D009976 8.8e-08 61.2 151 26.5
Lj3g0005293 Lotus japonicus HOM05D010700 ORTHO05D012225 8.8e-08 61.2 79 35.4
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 1.2e-07 60.8 99 33.3
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 1.2e-07 60.8 116 31.0
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 1.2e-07 60.8 116 31.0
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 1.2e-07 60.8 109 31.2
Thecc.10G125700 Theobroma cacao HOM05D002073 ORTHO05D001803 1.2e-07 60.8 83 33.7
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 1.5e-07 60.5 109 29.4
Psat4g125080 Pisum sativum HOM05D010700 ORTHO05D012225 1.5e-07 60.5 79 34.2
AL4G16900 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.0e-07 60.1 93 31.2
C01p52980 Brassica napus HOM05D007888 ORTHO05D009976 2.0e-07 60.1 126 28.6
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 2.6e-07 59.7 116 31.0
C01p53000 Brassica napus HOM05D007888 ORTHO05D009976 2.6e-07 59.7 151 26.5
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 2.6e-07 59.7 116 31.0
BolC1t05237H Brassica oleracea HOM05D007888 ORTHO05D009976 2.6e-07 59.7 119 28.6
Medtr5g097880 Medicago truncatula HOM05D010700 ORTHO05D012225 2.6e-07 59.7 77 35.1
AT2G21727 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 3.4e-07 59.3 110 30.9
BolC1t05230H Brassica oleracea HOM05D007888 ORTHO05D009976 3.4e-07 59.3 126 28.6
BcaC09g48237 Brassica carinata HOM05D007888 ORTHO05D009976 4.4e-07 58.9 101 30.7
Carub.0004s0518 Capsella rubella HOM05D007888 ORTHO05D009976 5.7e-07 58.5 96 28.1
Medtr2g438130 Medicago truncatula HOM05D010700 ORTHO05D012225 5.7e-07 58.5 77 33.8
C01p52970 Brassica napus HOM05D007888 ORTHO05D009976 9.8e-07 57.8 81 35.8
DCAR_002296 Daucus carota HOM05D010700 ORTHO05D012225 9.8e-07 57.8 87 33.3
Gohir.D05G328910 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.3e-06 57.4 79 36.7
Psat0ss9438g0040 Pisum sativum HOM05D010700 ORTHO05D012225 1.3e-06 57.4 80 31.2
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 1.3e-06 57.4 76 32.9
BolC1t05235H Brassica oleracea HOM05D007888 ORTHO05D009976 1.7e-06 57.0 156 25.6
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 2.2e-06 56.6 170 22.9
C01p53150 Brassica napus HOM05D007888 ORTHO05D009976 2.2e-06 56.6 88 33.0
Cpa.g.sc450.2 Carica papaya HOM05D014073 ORTHO05D014166 2.2e-06 56.6 133 32.3
Gohir.D05G328710 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.2e-06 56.6 78 38.5
Medtr8g063720 Medicago truncatula HOM05D010700 ORTHO05D012225 2.2e-06 56.6 77 28.6
Rhsim03G0156800 Rhododendron simsii HOM05D008521 ORTHO05D009651 2.8e-06 56.2 94 31.9
C01p52960 Brassica napus HOM05D007888 ORTHO05D009976 3.7e-06 55.8 156 25.0
BolC1t05232H Brassica oleracea HOM05D007888 ORTHO05D009976 3.7e-06 55.8 160 24.4
BolC1t05234H Brassica oleracea HOM05D007888 ORTHO05D009976 3.7e-06 55.8 156 25.0
Carub.0004s0516 Capsella rubella HOM05D007888 ORTHO05D009976 3.7e-06 55.8 91 29.7
Gohir.D05G326600 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.7e-06 55.8 78 38.5
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 3.7e-06 55.8 97 29.9
SHI46829 Sapria himalayana HOM05D000030 ORTHO05D000009 3.7e-06 55.8 84 32.1
Thecc.10G125800 Theobroma cacao HOM05D002073 ORTHO05D001803 3.7e-06 55.8 83 32.5
C01p52940 Brassica napus HOM05D007888 ORTHO05D009976 4.9e-06 55.5 156 25.0
TPR.G21868 Trifolium pratense HOM05D010700 ORTHO05D012225 4.9e-06 55.5 77 35.1
BolC1t05233H Brassica oleracea HOM05D007888 ORTHO05D009976 6.3e-06 55.1 156 25.0
Glyma.06G245400 Glycine max HOM05D010700 ORTHO05D012225 6.3e-06 55.1 80 31.2
CARHR112790 Cardamine hirsuta HOM05D007888 ORTHO05D009976 8.3e-06 54.7 67 37.3
Duzib168G1766 Durio zibethinus HOM05D032872 ORTHO05D025275 8.3e-06 54.7 127 28.3
Eucgr.B01478 Eucalyptus grandis HOM05D013157 ORTHO05D017001 8.3e-06 54.7 78 34.6
Nitab4.5_0001427g0010 Nicotiana tabacum HOM05D022492 ORTHO05D025233 8.3e-06 54.7 61 41.0


User provided reference genes

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