Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 4.9e-28 127.1 64 100.0
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 2.9e-25 117.9 64 90.6
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 2.9e-25 117.9 64 90.6
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 8.6e-25 116.3 64 89.1
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 8.6e-25 116.3 64 89.1
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 8.6e-25 116.3 64 89.1
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 6.1e-23 110.2 64 85.9
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 7.5e-21 103.2 61 83.6
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 3.2e-19 97.8 64 75.0
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 3.9e-17 90.9 59 71.2
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 1.1e-16 89.4 64 71.9
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 5.6e-16 87.0 59 69.5
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 9.5e-16 86.3 59 67.8
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 6.2e-15 83.6 58 69.0
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 6.2e-15 83.6 61 63.9
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 6.2e-15 83.6 58 69.0
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 2.3e-14 81.6 59 64.4
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.1e-14 81.3 58 67.2
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 5.2e-14 80.5 57 66.7
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.2e-14 80.5 59 64.4
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 5.2e-14 80.5 59 64.4
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 5.2e-14 80.5 58 67.2
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 2.0e-13 78.6 59 62.7
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 7.5e-13 76.6 59 61.0
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 9.8e-13 76.3 58 62.1
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 1.3e-12 75.9 59 64.4
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.3e-12 75.9 57 61.4
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.1e-11 72.8 54 63.0
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.4e-11 72.4 59 59.3
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.9e-11 72.0 59 59.3
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.2e-11 71.2 59 59.3
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 4.1e-11 70.9 53 58.5
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 5.4e-11 70.5 53 58.5
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 5.4e-11 70.5 53 58.5
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 7.0e-11 70.1 53 54.7
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 1.2e-10 69.3 55 56.4
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 56.6
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 56.6
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 56.6
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 56.6
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 56.6
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 56.6
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 56.6
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 56.6
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.7e-10 68.2 53 58.5
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.7e-10 68.2 55 54.5
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 2.7e-10 68.2 55 54.5
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 3.5e-10 67.8 52 61.5
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 4.6e-10 67.4 55 56.4
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 4.6e-10 67.4 55 50.9
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 6.0e-10 67.0 53 54.7
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 6.0e-10 67.0 53 58.5
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 6.0e-10 67.0 53 54.7
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 54.7
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 1.0e-09 66.2 59 52.5
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 54.7
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 54.7
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 1.7e-09 65.5 55 49.1
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 2.3e-09 65.1 44 68.2
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 3.0e-09 64.7 55 52.7
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 3.0e-09 64.7 55 52.7
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 3.9e-09 64.3 56 50.0
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 3.9e-09 64.3 55 52.7
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 5.0e-09 63.9 59 54.2
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 8.6e-09 63.2 53 52.8
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 8.6e-09 63.2 55 47.3
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 1.1e-08 62.8 48 64.6
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.5e-08 62.4 55 49.1
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.5e-08 62.4 55 45.5
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 1.9e-08 62.0 58 51.7
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 2.5e-08 61.6 56 51.8
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 2.5e-08 61.6 55 52.7
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 3.3e-08 61.2 55 47.3
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 3.3e-08 61.2 53 47.2
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.3e-08 61.2 53 47.2
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.3e-08 61.2 53 47.2
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 3.3e-08 61.2 53 47.2
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 4.3e-08 60.8 55 49.1
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 7.3e-08 60.1 52 51.9
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 7.3e-08 60.1 58 50.0
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 9.5e-08 59.7 53 47.2
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.2e-07 59.3 53 47.2
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 1.2e-07 59.3 53 43.4
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 1.6e-07 58.9 58 46.6
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 47.2
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 2.1e-07 58.5 44 61.4
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 2.1e-07 58.5 55 45.5
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 3.6e-07 57.8 59 50.8
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 4.7e-07 57.4 49 51.0
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 6.2e-07 57.0 50 60.0
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 1.1e-06 56.2 52 46.2
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 1.1e-06 56.2 53 45.3
Carub.0003s1092 Capsella rubella HOM05D007252 ORTHO05D009074 1.4e-06 55.8 64 50.0
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 1.4e-06 55.8 55 40.0
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 1.8e-06 55.5 44 59.1
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 1.8e-06 55.5 53 41.5
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 1.8e-06 55.5 48 50.0
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 5.2e-06 53.9 55 47.3
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 8.9e-06 53.1 54 46.3


User provided reference genes

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