Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.4e-158 561.6 280 100.0
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 4.3e-137 491.5 276 87.3
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 7.1e-132 474.2 275 84.7
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 8.7e-130 467.2 276 82.2
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 1.6e-128 463.0 276 81.9
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.1e-128 462.6 276 81.9
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 1.7e-125 453.0 276 81.2
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 1.7e-125 453.0 276 81.2
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 8.4e-125 450.7 276 80.8
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 2.9e-117 425.6 274 78.8
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 4.9e-117 424.9 276 78.3
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.7e-115 419.1 278 78.1
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.7e-109 399.8 226 85.0
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.9e-109 399.1 247 78.1
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.6e-107 393.3 278 68.7
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.9e-106 388.7 252 74.6
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.3e-93 347.1 264 70.1
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 5.0e-93 345.1 261 70.1
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 4.6e-91 338.6 271 59.8
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 9.7e-89 330.9 267 61.0
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.7e-88 330.1 269 60.2
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 3.7e-88 328.9 271 60.1
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 6.3e-88 328.2 268 61.2
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 8.2e-88 327.8 271 59.8
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.4e-87 326.2 271 59.0
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 3.1e-87 325.9 187 83.4
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 4.1e-87 325.5 271 60.5
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 2.0e-86 323.2 271 59.4
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 3.4e-86 322.4 264 58.7
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 2.2e-85 319.7 270 59.6
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.9e-85 319.3 273 58.2
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 5.0e-85 318.5 267 64.8
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.4e-84 317.0 261 60.9
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 5.5e-84 315.1 262 58.0
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 7.2e-84 314.7 268 59.0
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 9.4e-84 314.3 277 58.1
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 1.2e-83 313.9 272 56.6
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 1.2e-83 313.9 272 56.6
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 2.1e-83 313.2 260 61.5
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 2.7e-83 312.8 277 56.7
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 2.3e-82 309.7 264 60.2
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 3.0e-82 309.3 277 56.7
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 3.0e-82 309.3 269 57.2
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 3.0e-82 309.3 261 58.6
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 6.7e-82 308.1 270 55.9
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 6.7e-82 308.1 268 57.5
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 6.7e-82 308.1 268 57.1
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.1e-81 307.4 267 57.3
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 1.5e-81 307.0 262 56.9
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 2.0e-81 306.6 272 56.6
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 2.0e-81 306.6 286 54.5
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 2.6e-81 306.2 271 55.7
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 3.3e-81 305.8 269 57.6
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.7e-80 303.5 272 54.0
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 2.2e-80 303.1 269 59.1
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.2e-80 303.1 269 59.1
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.8e-80 302.0 271 58.3
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.8e-80 302.0 271 58.3
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 6.3e-80 301.6 271 58.3
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 6.3e-80 301.6 272 55.5
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 8.2e-80 301.2 276 55.1
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.4e-79 300.4 262 55.7
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 1.8e-79 300.1 261 56.3
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 5.3e-79 298.5 268 58.2
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 9.1e-79 297.7 263 55.5
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.2e-78 297.4 246 57.7
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.2e-78 297.4 276 56.9
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 2.0e-78 296.6 277 55.6
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 4.5e-78 295.4 265 56.2
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.3e-77 293.9 279 53.0
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.2e-77 293.1 248 58.1
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 2.9e-77 292.7 257 56.4
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 5.0e-77 292.0 279 52.7
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 8.5e-77 291.2 255 56.9
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 9.4e-76 287.7 261 53.6
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.2e-75 287.3 289 51.9
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.6e-75 287.0 262 61.5
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 2.1e-75 286.6 260 55.4
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 2.7e-75 286.2 252 55.6
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 6.1e-75 285.0 279 52.3
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 1.4e-74 283.9 271 53.9
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 1.4e-74 283.9 271 53.9
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.4e-74 283.9 264 54.5
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.8e-74 283.5 272 53.7
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 5.2e-74 282.0 213 66.2
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.5e-73 280.4 261 55.2
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 2.6e-73 279.6 251 55.8
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 9.7e-73 277.7 261 54.0
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.7e-72 276.9 260 55.8
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 1.7e-72 276.9 256 53.5
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 6.3e-72 275.0 266 54.1
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 4.5e-70 268.9 192 71.4
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 1.7e-69 266.9 264 57.2
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 6.5e-69 265.0 248 54.8
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 1.9e-68 263.5 330 45.8
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 2.5e-68 263.1 262 50.4
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 8.0e-67 258.1 276 48.9
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 8.8e-66 254.6 271 50.9
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.0e-65 253.4 268 48.5
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 2.0e-65 253.4 262 52.7
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 5.7e-65 251.9 239 54.0
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.3e-64 250.8 216 57.4
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 2.4e-63 246.5 254 48.8
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 7.0e-63 245.0 251 51.4
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 4.5e-62 242.3 246 49.6
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 2.9e-61 239.6 265 47.9
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 4.2e-60 235.7 260 46.2
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 6.8e-58 228.4 191 57.1
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 4.4e-57 225.7 261 47.9
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 5.7e-57 225.3 266 45.9
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 2.4e-55 219.9 270 47.0
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 4.1e-55 219.2 186 56.5
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 7.7e-54 214.9 190 53.7
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 8.6e-53 211.5 188 52.7
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 1.4e-50 204.1 247 42.9
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 2.9e-48 196.4 277 40.8
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 5.4e-47 192.2 195 52.8
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 9.5e-44 181.4 243 48.1
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.6e-43 180.6 165 55.2
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 3.6e-43 179.5 262 39.7
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 8.0e-43 178.3 187 50.8
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 3.1e-42 176.4 138 60.1
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 8.9e-42 174.9 270 39.3
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 2.6e-41 173.3 269 39.4
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 4.4e-41 172.6 249 41.4
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 5.8e-41 172.2 213 48.4
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 7.0e-39 165.2 145 56.6
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 4.3e-36 156.0 174 50.0
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 2.0e-33 147.1 138 55.1
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 7.5e-33 145.2 144 53.5
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 4.9e-32 142.5 143 48.3
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 1.3e-29 134.4 133 54.1
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.3e-28 129.4 107 59.8
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 9.5e-28 128.3 82 74.4
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 1.1e-26 124.8 74 79.7
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 4.1e-23 112.8 250 31.6
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 1.7e-21 107.5 61 83.6
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 1.7e-21 107.5 61 83.6
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 1.4e-18 97.8 99 48.5
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 6.8e-18 95.5 93 51.6
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 4.2e-15 86.3 81 55.6
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 5.4e-15 85.9 323 25.1
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.8e-14 82.0 58 67.2
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 9.6e-12 75.1 58 58.6
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 1.3e-11 74.7 131 34.4
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 2.1e-11 73.9 218 28.9
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 6.9e-10 68.9 224 26.8
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 2.6e-09 67.0 199 27.1
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 7.6e-09 65.5 226 26.1
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 1.3e-08 64.7 226 27.4
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 4.9e-08 62.8 221 25.8
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 4.9e-08 62.8 216 26.9
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 8.4e-08 62.0 204 26.5
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 3.2e-07 60.1 247 24.7
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 4.2e-07 59.7 84 40.5
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 5.4e-07 59.3 217 27.6
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 9.3e-07 58.5 229 26.6
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 9.3e-07 58.5 219 26.0
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 1.2e-06 58.2 55 54.5
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 1.2e-06 58.2 170 27.6
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 1.6e-06 57.8 159 29.6
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.7e-06 57.0 221 24.9
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 2.7e-06 57.0 217 27.2
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 2.7e-06 57.0 216 25.0
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 3.5e-06 56.6 159 28.3
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 4.6e-06 56.2 221 24.9
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 7.9e-06 55.5 224 26.8
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 7.9e-06 55.5 238 24.4


User provided reference genes

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