Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G10880 Arabidopsis thaliana HOM05D012263 ORTHO05D000900 1.7e-158 562.8 320 100.0
AL3G22400 Arabidopsis lyrata HOM05D012263 ORTHO05D000900 1.1e-136 490.3 320 85.6
Carub.0003s1013 Capsella rubella HOM05D012263 ORTHO05D000900 1.3e-81 307.4 317 63.1
Sp3g09210 Schrenkiella parvula HOM05D012263 ORTHO05D000900 5.5e-80 302.0 334 59.0
Thhalv10021043m.g Eutrema salsugineum HOM05D012263 ORTHO05D000900 4.7e-79 298.9 323 64.4
BcaC05g29405 Brassica carinata HOM05D012263 ORTHO05D000900 5.2e-62 242.3 329 52.3
C05p57200 Brassica napus HOM05D012263 ORTHO05D000900 5.2e-62 242.3 329 52.3
BolC5t34381H Brassica oleracea HOM05D012263 ORTHO05D000900 5.2e-62 242.3 329 52.3
A05p38350 Brassica napus HOM05D012263 ORTHO05D000900 1.6e-55 220.7 324 53.7
BcaB06g25654 Brassica carinata HOM05D012263 ORTHO05D000900 2.9e-49 199.9 338 50.6
BraA05t22625Z Brassica rapa HOM05D012263 ORTHO05D000900 6.6e-49 198.7 323 48.9
BcaB06g25659 Brassica carinata HOM05D012263 ORTHO05D000900 2.8e-39 166.8 338 46.7
CARHR085470 Cardamine hirsuta HOM05D012263 ORTHO05D000900 3.3e-32 143.3 130 66.2
Sp6g37650 Schrenkiella parvula HOM05D000592 ORTHO05D000900 4.0e-30 136.3 421 33.7
CARHR208080 Cardamine hirsuta HOM05D000592 ORTHO05D000900 6.8e-30 135.6 412 35.0
THA.LOC104816506 Tarenaya hassleriana HOM05D000592 ORTHO05D000900 1.9e-19 100.9 367 30.8
Thhalv10013570m.g Eutrema salsugineum HOM05D000592 ORTHO05D000900 2.4e-19 100.5 429 30.1
BolC3t12808H Brassica oleracea HOM05D000592 ORTHO05D000900 3.9e-17 93.2 190 40.0
BraA03t09586Z Brassica rapa HOM05D000592 ORTHO05D000900 5.1e-17 92.8 86 61.6
A03p02220 Brassica napus HOM05D000592 ORTHO05D000900 1.5e-16 91.3 86 61.6
Carub.0006s0411 Capsella rubella HOM05D000592 ORTHO05D000900 2.4e-14 84.0 433 27.7
Lj1g0022472 Lotus japonicus HOM05D000592 ORTHO05D000900 2.4e-14 84.0 171 38.0
Cc02_g05180 Coffea canephora HOM05D000592 ORTHO05D000900 4.0e-14 83.2 245 32.7
Gohir.A05G107500 Gossypium hirsutum HOM05D000592 ORTHO05D000900 1.2e-13 81.6 169 37.9
Sopen08g026190 Solanum pennellii HOM05D000592 ORTHO05D000900 2.0e-13 80.9 103 44.7
Solyc08g077680.3 Solanum lycopersicum HOM05D000592 ORTHO05D000900 4.4e-13 79.7 174 33.9
BcaB01g05720 Brassica carinata HOM05D000592 ORTHO05D000900 5.8e-13 79.3 65 72.3
BcaC06g32227 Brassica carinata HOM05D000592 ORTHO05D000900 5.8e-13 79.3 195 41.5
vmacro06905 Vaccinium macrocarpon HOM05D000592 ORTHO05D000900 5.8e-13 79.3 217 33.2
Ca_25477_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 9.9e-13 78.6 173 38.2
Ca_29869_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 9.9e-13 78.6 173 38.2
Gohir.D05G107700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 2.2e-12 77.4 169 36.7
Hund13435 Selenicereus undatus HOM05D000592 ORTHO05D000900 4.9e-12 76.3 292 30.8
PGSC0003DMG400001834 Solanum tuberosum HOM05D000592 ORTHO05D000900 4.9e-12 76.3 103 42.7
Gorai.013G009500 Gossypium raimondii HOM05D000592 ORTHO05D000900 8.4e-12 75.5 168 34.5
Medtr6g082800 Medicago truncatula HOM05D000592 ORTHO05D000900 8.4e-12 75.5 173 36.4
Solyc03g095600.1 Solanum lycopersicum HOM05D000592 ORTHO05D000900 1.1e-11 75.1 173 36.4
Atru.chr12.190 Acer truncatum HOM05D000592 ORTHO05D000900 1.4e-11 74.7 194 33.0
AL6G15020 Arabidopsis lyrata HOM05D000592 ORTHO05D000900 1.4e-11 74.7 416 25.2
CSS0036597 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D000900 1.4e-11 74.7 96 47.9
CiPaw.13G062900 Carya illinoinensis HOM05D000592 ORTHO05D000900 1.4e-11 74.7 98 49.0
Gorai.009G111800 Gossypium raimondii HOM05D000592 ORTHO05D000900 1.4e-11 74.7 169 35.5
C03p02560 Brassica napus HOM05D000592 ORTHO05D000900 1.9e-11 74.3 57 70.2
arahy.Tifrunner.gnm1.ann1.18PYAU Arachis hypogaea HOM05D000592 ORTHO05D000900 3.2e-11 73.6 81 51.9
CAN.G1229.1 Capsicum annuum HOM05D000592 ORTHO05D000900 3.2e-11 73.6 81 54.3
Nitab4.5_0005979g0020 Nicotiana tabacum HOM05D000592 ORTHO05D000900 3.2e-11 73.6 92 46.7
Peaxi162Scf00073g02222 Petunia axillaris HOM05D000592 ORTHO05D000900 3.2e-11 73.6 81 54.3
Sopen03g025550 Solanum pennellii HOM05D000592 ORTHO05D000900 3.2e-11 73.6 173 35.8
Gohir.D13G008266 Gossypium hirsutum HOM05D000592 ORTHO05D000900 4.2e-11 73.2 86 48.8
Gorai.013G008700 Gossypium raimondii HOM05D000592 ORTHO05D000900 4.2e-11 73.2 86 48.8
Gorai.013G008900 Gossypium raimondii HOM05D000125 ORTHO05D000900 4.2e-11 73.2 86 48.8
Manes.18G139900 Manihot esculenta HOM05D000592 ORTHO05D000900 4.2e-11 73.2 308 26.9
Cpa.g.sc19.38 Carica papaya HOM05D000592 ORTHO05D000900 5.4e-11 72.8 172 35.5
Sc10g0003080 Simmondsia chinensis HOM05D000592 ORTHO05D000900 7.1e-11 72.4 94 48.9
vmacro02870 Vaccinium macrocarpon HOM05D000592 ORTHO05D000900 9.3e-11 72.0 98 43.9
Hma1.2p1_0264F.1_g105920 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 1.2e-10 71.6 226 31.4
GSVIVG01032654001 Vitis vinifera HOM05D000592 ORTHO05D000900 1.2e-10 71.6 208 30.3
Hma1.2p1_1805F.1_g303110 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 1.6e-10 71.2 226 30.1
PGSC0003DMG400022957 Solanum tuberosum HOM05D000592 ORTHO05D000900 2.1e-10 70.9 204 29.9
EL10Ac2g02670 Beta vulgaris HOM05D000592 ORTHO05D000900 2.7e-10 70.5 223 32.3
Dinv21860 Davidia involucrata HOM05D000592 ORTHO05D000900 2.7e-10 70.5 208 31.7
Gohir.A03G028700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 3.5e-10 70.1 199 31.7
Gorai.003G146700 Gossypium raimondii HOM05D000592 ORTHO05D000900 3.5e-10 70.1 132 36.4
TAR633G2344 Trochodendron aralioides HOM05D000592 ORTHO05D000900 3.5e-10 70.1 82 50.0
AT5G05180 Arabidopsis thaliana HOM05D000592 ORTHO05D000900 4.6e-10 69.7 413 25.4
Hma1.2p1_0161F.1_g072140 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 4.6e-10 69.7 156 35.3
SGA_v2.0_scaffold20G09285 Striga asiatica HOM05D000592 ORTHO05D000900 4.6e-10 69.7 110 39.1
Actinidia11628 Actinidia chinensis HOM05D000592 ORTHO05D000900 6.0e-10 69.3 96 44.8
CDE07G1883 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 6.0e-10 69.3 222 30.6
Oeu027193.1 Olea europaea HOM05D000592 ORTHO05D000900 6.0e-10 69.3 281 28.8
Gohir.D03G139900 Gossypium hirsutum HOM05D000592 ORTHO05D000900 7.8e-10 68.9 168 33.3
Rhsim13G0058700 Rhododendron simsii HOM05D000592 ORTHO05D000900 1.0e-09 68.6 162 33.3
Ciclev10000625m.g Citrus clementina HOM05D000592 ORTHO05D000900 1.3e-09 68.2 170 34.7
Dinv12285 Davidia involucrata HOM05D000592 ORTHO05D000900 1.3e-09 68.2 174 34.5
Gohir.D13G008332 Gossypium hirsutum HOM05D000125 ORTHO05D000900 1.7e-09 67.8 86 45.3
Lj6g0013783 Lotus japonicus HOM05D000592 ORTHO05D000900 1.7e-09 67.8 221 32.1
Zm00001eb281940 Zea mays HOM05D000592 ORTHO05D000900 2.3e-09 67.4 149 36.2
Dinv28735 Davidia involucrata HOM05D000592 ORTHO05D000900 3.0e-09 67.0 281 27.8
Manes.02G210800 Manihot esculenta HOM05D000592 ORTHO05D000900 3.0e-09 67.0 320 26.9
Potri.019G131000 Populus trichocarpa HOM05D000592 ORTHO05D000900 3.9e-09 66.6 96 40.6
Sabra19G0075300 Salix brachista HOM05D000592 ORTHO05D000900 3.9e-09 66.6 160 34.4
Os05g0168800 Oryza sativa ssp. japonica HOM05D000592 ORTHO05D000900 5.1e-09 66.2 89 42.7
ECA248G1606 Erigeron canadensis HOM05D000592 ORTHO05D000900 6.6e-09 65.9 99 40.4
TWI79G0473 Tripterygium wilfordii HOM05D000592 ORTHO05D000900 6.6e-09 65.9 78 48.7
unitig_26.g10224 Utricularia gibba HOM05D000592 ORTHO05D000900 6.6e-09 65.9 172 29.1
Phvul.008G246300 Phaseolus vulgaris HOM05D000592 ORTHO05D000900 1.1e-08 65.1 139 35.3
QL08p065113 Quercus lobata HOM05D000592 ORTHO05D000900 1.1e-08 65.1 331 27.5
CSS0047619 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D000900 1.5e-08 64.7 224 27.7
Hund28036 Selenicereus undatus HOM05D000592 ORTHO05D000900 1.5e-08 64.7 170 32.4
Hund28038 Selenicereus undatus HOM05D000592 ORTHO05D000900 1.5e-08 64.7 170 32.4
Aa31LG11G6030 Aethionema arabicum HOM05D000592 ORTHO05D000900 1.9e-08 64.3 47 70.2
Ah.12g064480 Amaranthus hybridus HOM05D000592 ORTHO05D000900 1.9e-08 64.3 171 33.3
ECA238G3344 Erigeron canadensis HOM05D016672 ORTHO05D000900 1.9e-08 64.3 103 40.8
Gohir.D13G008700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 1.9e-08 64.3 443 24.6
RcHm_v2.0_Chr5g0073401 Rosa chinensis HOM05D000592 ORTHO05D000900 1.9e-08 64.3 147 34.0
MELO3C020482.2 Cucumis melo HOM05D000592 ORTHO05D000900 2.5e-08 63.9 167 32.9
Zm00001eb345890 Zea mays HOM05D000592 ORTHO05D000900 2.5e-08 63.9 89 43.8
Nn5g26826 Nelumbo nucifera HOM05D000592 ORTHO05D000900 3.3e-08 63.5 86 45.3
Prupe.2G266000 Prunus persica HOM05D000592 ORTHO05D000900 3.3e-08 63.5 94 41.5
Cc00_g18900 Coffea canephora HOM05D000592 ORTHO05D000900 4.3e-08 63.2 177 29.9
HanXRQChr07g0204871 Helianthus annuus HOM05D016672 ORTHO05D000900 4.3e-08 63.2 311 26.0
Lsat_1_v5_gn_2_126640 Lactuca sativa HOM05D016672 ORTHO05D000900 4.3e-08 63.2 103 39.8
PSO017G2726 Papaver somniferum HOM05D000592 ORTHO05D000900 5.6e-08 62.8 96 41.7
TWI53G1016 Tripterygium wilfordii HOM05D000592 ORTHO05D000900 5.6e-08 62.8 79 50.6
ClCG11G005550 Citrullus lanatus HOM05D000592 ORTHO05D000900 7.3e-08 62.4 177 29.4
Lj1P969T46 Lonicera japonica HOM05D000592 ORTHO05D000900 7.3e-08 62.4 80 52.5
Nitab4.5_0000171g0300 Nicotiana tabacum HOM05D000592 ORTHO05D000900 7.3e-08 62.4 50 66.0
Ca_27035_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 9.6e-08 62.0 172 32.6
Medtr3g093770 Medicago truncatula HOM05D009393 ORTHO05D000900 9.6e-08 62.0 95 40.0
Nitab4.5_0004884g0010 Nicotiana tabacum HOM05D000592 ORTHO05D000900 9.6e-08 62.0 63 50.8
Os01g0168100 Oryza sativa ssp. japonica HOM05D000592 ORTHO05D000900 9.6e-08 62.0 89 41.6
PSO732G0509 Papaver somniferum HOM05D031600 ORTHO05D000900 9.6e-08 62.0 98 39.8
FAN06G2529 Fragaria x ananassa HOM05D000592 ORTHO05D000900 1.3e-07 61.6 168 29.8
MD00G1193100 Malus domestica HOM05D000592 ORTHO05D000900 1.3e-07 61.6 94 40.4
RcHm_v2.0_Chr1g0372621 Rosa chinensis HOM05D000592 ORTHO05D000900 1.3e-07 61.6 168 30.4
TPR.G13962 Trifolium pratense HOM05D009393 ORTHO05D012382 1.3e-07 61.6 154 32.5
TPR.G24810 Trifolium pratense HOM05D009393 ORTHO05D000900 1.3e-07 61.6 83 48.2
FvH4_7g26161 Fragaria vesca HOM05D000592 ORTHO05D000900 1.6e-07 61.2 168 29.8
Manes.07G141800 Manihot esculenta HOM05D000592 ORTHO05D000900 1.6e-07 61.2 214 30.4
Nn2g10263 Nelumbo nucifera HOM05D000592 ORTHO05D000900 1.6e-07 61.2 57 56.1
Thecc.10G185300 Theobroma cacao HOM05D000592 ORTHO05D000900 1.6e-07 61.2 76 48.7
A10p31010 Brassica napus HOM05D022198 ORTHO05D021807 2.1e-07 60.8 126 39.7
BraA10t45146Z Brassica rapa HOM05D022198 ORTHO05D021807 2.1e-07 60.8 126 39.7
CAN.G572.33 Capsicum annuum HOM05D000592 ORTHO05D000900 2.1e-07 60.8 54 59.3
Migut.F01230 Erythranthe guttata HOM05D000592 ORTHO05D000900 2.1e-07 60.8 242 27.3
Glyma.02G236600 Glycine max HOM05D000592 ORTHO05D000900 2.1e-07 60.8 76 50.0
PSO017G4207 Papaver somniferum HOM05D000592 ORTHO05D000900 2.1e-07 60.8 157 33.8
PSO170G4625 Papaver somniferum HOM05D000592 ORTHO05D000900 2.1e-07 60.8 98 41.8
MELO3C022108.2 Cucumis melo HOM05D000592 ORTHO05D000900 2.8e-07 60.5 179 29.1
Glyma.04G223600 Glycine max HOM05D009393 ORTHO05D000900 2.8e-07 60.5 61 52.5
Cfa011841 Carpinus fangiana HOM05D000592 ORTHO05D000900 3.6e-07 60.1 57 57.9
Haze_24477 Corylus avellana HOM05D000592 ORTHO05D000900 3.6e-07 60.1 57 56.1
Lalb_Chr23g0272131 Lupinus albus HOM05D000592 ORTHO05D000900 3.6e-07 60.1 76 51.3
VMungo1309G1617 Vigna mungo HOM05D000592 ORTHO05D000900 3.6e-07 60.1 76 50.0
CDE12G0881 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 4.8e-07 59.7 377 25.2
MD07G1236000 Malus domestica HOM05D000592 ORTHO05D000900 4.8e-07 59.7 83 44.6
MD07G1236600 Malus domestica HOM05D000592 ORTHO05D000900 4.8e-07 59.7 172 32.0
Phvul.009G042500 Phaseolus vulgaris HOM05D009393 ORTHO05D000900 4.8e-07 59.7 76 48.7
FAN25G3419 Fragaria x ananassa HOM05D000592 ORTHO05D000900 6.2e-07 59.3 134 34.3
Glyma.14G205100 Glycine max HOM05D000592 ORTHO05D000900 6.2e-07 59.3 43 69.8
Manes.10G003500 Manihot esculenta HOM05D000592 ORTHO05D000900 6.2e-07 59.3 205 30.2
Medtr8g032900 Medicago truncatula HOM05D009393 ORTHO05D012382 6.2e-07 59.3 96 39.6
Actinidia13636 Actinidia chinensis HOM05D000592 ORTHO05D000900 8.1e-07 58.9 61 50.8
BcaC06g32226 Brassica carinata HOM05D022198 ORTHO05D021807 1.1e-06 58.5 65 50.8
Migut.D00814 Erythranthe guttata HOM05D000592 ORTHO05D000900 1.1e-06 58.5 72 44.4
Eucgr.B04033 Eucalyptus grandis HOM05D000592 ORTHO05D000900 1.1e-06 58.5 85 40.0
FAN01G3120 Fragaria x ananassa HOM05D000592 ORTHO05D000900 1.1e-06 58.5 232 26.3
Peaxi162Scf00395g01110 Petunia axillaris HOM05D000592 ORTHO05D000900 1.1e-06 58.5 51 56.9
MSTRG.160 Avicennia marina HOM05D000592 ORTHO05D000900 1.4e-06 58.2 207 26.6
COL.COLO4_19478 Corchorus olitorius HOM05D000592 ORTHO05D000900 1.4e-06 58.2 76 46.1
MD07G1236900 Malus domestica HOM05D000592 ORTHO05D000900 1.4e-06 58.2 172 32.0
Oeu064004.1 Olea europaea HOM05D000592 ORTHO05D000900 1.4e-06 58.2 51 58.8
PSO302G0277 Papaver somniferum HOM05D031600 ORTHO05D000900 1.4e-06 58.2 86 45.3
Psat5g069440 Pisum sativum HOM05D009393 ORTHO05D012382 1.4e-06 58.2 101 37.6
arahy.Tifrunner.gnm1.ann1.0YJA3I Arachis hypogaea HOM05D000592 ORTHO05D000900 1.8e-06 57.8 45 66.7
COL.COLO4_11219 Corchorus olitorius HOM05D000592 ORTHO05D000900 1.8e-06 57.8 180 30.0
Oeu015578.1 Olea europaea HOM05D000592 ORTHO05D000900 1.8e-06 57.8 94 38.3
Atru.chr10.2335 Acer truncatum HOM05D000592 ORTHO05D000900 3.1e-06 57.0 70 44.3
Medtr8g032930 Medicago truncatula HOM05D009393 ORTHO05D012382 3.1e-06 57.0 166 31.9
Psat1g034400 Pisum sativum HOM05D009393 ORTHO05D000900 4.0e-06 56.6 173 35.3
CANSAT56G2503 Cannabis sativa HOM05D000592 ORTHO05D000900 5.3e-06 56.2 76 43.4
Gohir.A13G008100 Gossypium hirsutum HOM05D000592 ORTHO05D000900 5.3e-06 56.2 170 30.0
Potri.013G158100 Populus trichocarpa HOM05D000592 ORTHO05D000900 5.3e-06 56.2 63 49.2
Sabra13G0126900 Salix brachista HOM05D000592 ORTHO05D000900 5.3e-06 56.2 65 47.7
Thecc.09G364300 Theobroma cacao HOM05D000592 ORTHO05D000900 5.3e-06 56.2 63 47.6
ECA247G3974 Erigeron canadensis HOM05D000592 ORTHO05D000900 6.9e-06 55.8 204 28.4
Glyma.06G141300 Glycine max HOM05D009393 ORTHO05D000900 6.9e-06 55.8 57 50.9
Gohir.D13G008601 Gossypium hirsutum HOM05D000592 ORTHO05D000900 6.9e-06 55.8 46 60.9
Gorai.013G009300 Gossypium raimondii HOM05D000592 ORTHO05D000900 6.9e-06 55.8 46 60.9
Lalb_Chr10g0103811 Lupinus albus HOM05D000592 ORTHO05D000900 6.9e-06 55.8 82 43.9
Medtr5g075490 Medicago truncatula HOM05D000592 ORTHO05D000900 6.9e-06 55.8 63 50.8
Ah.08g215540 Amaranthus hybridus HOM05D000592 ORTHO05D000900 9.0e-06 55.5 192 29.7
Cpa.g.sc2.288 Carica papaya HOM05D000592 ORTHO05D000900 9.0e-06 55.5 298 23.5
FAN10G3566 Fragaria x ananassa HOM05D000592 ORTHO05D000900 9.0e-06 55.5 168 28.6
MD00G1192700 Malus domestica HOM05D000592 ORTHO05D000900 9.0e-06 55.5 172 30.2
Psat2g049720 Pisum sativum HOM05D000592 ORTHO05D000900 9.0e-06 55.5 191 27.2
Prupe.6G040100 Prunus persica HOM05D000592 ORTHO05D000900 9.0e-06 55.5 57 50.9
PGR102G2955 Punica granatum HOM05D000592 ORTHO05D000900 9.0e-06 55.5 99 40.4
Sabra19G0127600 Salix brachista HOM05D000592 ORTHO05D000900 9.0e-06 55.5 84 41.7


User provided reference genes

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