Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 1.8e-292 1008.4 488 100.0
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 6.9e-276 953.4 491 93.9
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 8.5e-266 919.8 492 90.0
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 1.1e-265 919.5 489 90.2
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.2e-259 899.4 489 88.8
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 1.6e-256 889.0 492 88.2
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 4.1e-236 821.2 490 81.4
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 8.6e-234 813.5 489 81.6
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 1.2e-232 809.7 489 81.0
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 1.6e-216 756.1 493 74.4
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 3.1e-207 725.3 487 74.7
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 4.5e-190 668.3 480 66.9
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 1.3e-186 656.8 474 65.2
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 7.4e-185 651.0 489 65.2
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.6e-184 649.8 487 64.5
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 1.4e-183 646.7 417 71.2
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 6.9e-183 644.4 488 63.5
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.5e-182 643.3 496 63.3
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.6e-182 642.5 496 63.3
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.6e-182 641.0 496 63.3
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.6e-182 641.0 496 63.3
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.0e-181 640.6 496 63.3
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.0e-181 640.6 496 63.3
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-181 640.2 496 62.9
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-181 640.2 488 63.7
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.7e-181 639.8 496 62.9
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 1.7e-181 639.8 480 63.8
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 4.9e-181 638.3 484 62.2
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.5e-181 637.9 496 63.1
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.4e-181 637.5 487 62.6
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.4e-180 636.7 494 62.1
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.9e-180 636.3 496 62.9
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 2.7e-179 632.5 478 64.0
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 4.6e-179 631.7 473 64.9
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 8.7e-178 627.5 480 61.9
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 3.3e-177 625.5 473 64.3
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 5.7e-177 624.8 480 62.9
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 9.6e-177 624.0 479 61.6
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 1.6e-176 623.2 468 63.2
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 3.7e-176 622.1 470 64.0
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 6.3e-176 621.3 480 63.1
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 8.2e-176 620.9 473 62.8
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 2.4e-175 619.4 494 61.7
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 3.1e-175 619.0 480 63.8
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 1.5e-174 616.7 494 60.7
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 5.9e-174 614.8 473 62.2
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 5.9e-174 614.8 470 62.8
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 1.0e-173 614.0 485 62.3
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 2.2e-173 612.8 400 70.2
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 7.2e-172 607.8 474 62.4
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 1.2e-171 607.1 410 68.3
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 4.6e-171 605.1 401 69.1
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 7.9e-171 604.4 399 70.2
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 1.1e-169 600.5 398 68.3
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 1.5e-169 600.1 398 70.1
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 3.3e-169 599.0 460 62.4
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 5.7e-169 598.2 401 69.3
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 7.4e-169 597.8 384 71.1
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 7.4e-169 597.8 412 67.5
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 7.4e-169 597.8 462 61.7
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 2.2e-168 596.3 491 59.1
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 1.1e-167 594.0 406 68.0
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 1.1e-167 594.0 396 68.9
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 3.1e-167 592.4 467 62.3
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 1.2e-166 590.5 465 61.1
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 1.5e-166 590.1 397 68.3
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 1.0e-165 587.4 401 69.3
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 9.4e-164 580.9 399 67.7
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 9.4e-164 580.9 395 68.6
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 1.2e-163 580.5 397 67.5
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 2.1e-163 579.7 485 58.4
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 3.0e-162 575.9 394 66.8
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 3.3e-161 572.4 358 73.5
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 2.8e-160 569.3 397 66.8
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 1.4e-159 567.0 493 57.2
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 1.7e-157 560.1 403 64.8
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 5.0e-157 558.5 373 68.9
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 1.1e-156 557.4 388 67.3
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 6.1e-155 551.6 401 64.8
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 1.5e-153 547.0 434 61.1
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 2.0e-153 546.6 430 61.9
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.3e-152 543.9 401 64.3
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 1.7e-152 543.5 399 63.7
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 1.8e-151 540.0 364 68.1
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 2.0e-150 536.6 369 66.9
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 2.6e-150 536.2 358 68.4
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 1.1e-148 530.8 347 71.2
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 1.5e-148 530.4 473 57.3
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 2.5e-148 529.6 481 55.7
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 4.2e-148 528.9 496 54.6
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 3.3e-145 519.2 348 68.7
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 2.9e-133 479.6 398 58.0
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 1.8e-127 460.3 395 56.7
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 3.5e-118 429.5 289 71.3
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 1.9e-116 423.7 347 59.1
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 9.5e-108 394.8 459 47.1
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 3.4e-105 386.3 413 47.7
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 3.6e-91 339.7 295 56.3
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 8.4e-88 328.6 432 42.4
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 2.4e-82 310.5 433 40.4
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.4e-82 310.5 211 68.7
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 5.1e-69 266.2 449 37.9
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.1e-63 248.4 297 44.4
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 8.7e-61 238.8 156 68.6
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 5.9e-57 226.1 394 35.3
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 2.6e-41 174.1 118 61.0
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 6.5e-40 169.5 317 32.2
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 1.4e-29 135.2 293 31.4
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.1e-26 125.6 95 63.2
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 5.2e-21 106.7 59 86.4
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 4.8e-19 100.1 295 27.8
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 6.3e-19 99.8 72 63.9
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 1.7e-08 65.1 82 42.7


User provided reference genes

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