Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 2017.7 1054 100.0
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1971.4 1054 97.5
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1967.2 1055 97.2
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1936.0 1056 95.4
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1900.6 1055 93.9
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1889.8 1057 93.1
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1886.3 1062 93.5
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1883.2 1072 91.3
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1882.8 1072 91.3
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1855.9 1089 89.0
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1855.1 1089 89.1
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1851.6 1055 91.4
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1848.2 1074 89.6
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1832.4 1042 91.5
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1822.0 1074 88.6
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1808.1 1056 90.2
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1794.6 1041 89.6
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1788.9 1074 87.2
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1763.0 1074 86.2
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1749.6 1057 85.5
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1730.3 1062 86.4
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1545.0 1067 75.3
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1538.1 1086 73.9
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1537.3 1066 74.8
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1529.2 1077 74.7
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1528.5 1070 74.8
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1526.5 1077 73.4
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1525.4 1076 73.9
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1520.0 1070 73.6
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1517.7 1076 73.0
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1515.7 1080 72.8
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1513.8 1070 73.0
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1505.7 1069 73.6
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1504.6 1079 72.5
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1503.8 1074 72.4
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1503.8 1077 73.0
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1501.1 1071 72.5
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1500.0 1071 73.1
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1498.8 1071 73.4
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1494.6 1083 72.9
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1488.4 1067 72.0
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1487.6 1071 72.6
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1487.2 1073 72.0
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1485.7 1070 73.0
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1479.9 1073 71.7
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1478.4 1068 72.6
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1476.8 1079 71.0
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1476.8 1069 71.7
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1473.8 1071 72.4
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1471.8 1064 72.8
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1470.7 1080 71.1
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1468.4 1071 71.2
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1468.0 1024 74.8
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1467.2 1077 72.1
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1464.5 1071 71.2
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1461.4 1071 71.7
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1461.0 1041 73.3
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1461.0 1071 71.4
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1456.0 1066 71.7
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1454.5 1063 71.3
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1454.1 1062 71.8
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1452.6 1066 71.1
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1452.6 1063 71.1
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1448.3 1071 70.2
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1442.9 1077 70.3
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1441.8 1080 69.6
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1438.7 1071 70.1
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1427.5 1145 67.5
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1411.0 1077 68.4
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1405.6 1078 68.9
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1402.5 1062 70.2
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1401.7 1078 68.0
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1396.3 1109 67.9
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1395.2 1093 67.4
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1380.9 1081 67.7
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1348.6 1067 67.1
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1339.3 1093 65.6
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1327.4 1065 65.8
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1324.7 1177 63.1
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1318.9 987 70.8
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1317.0 1066 65.6
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1312.4 1126 65.2
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1305.4 1067 65.2
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1302.0 1072 64.6
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1298.1 1083 65.0
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1298.1 1002 69.5
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1291.6 1068 65.4
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1290.4 1106 63.8
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1289.6 946 71.1
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1278.1 1152 62.7
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1265.4 1101 62.6
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1248.8 1097 61.5
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1247.3 1069 61.2
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1243.4 1042 64.8
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1241.1 1170 60.8
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1230.3 1066 60.9
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1223.0 1067 62.5
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1212.2 1069 59.7
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1210.7 1059 62.3
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1193.7 1064 61.8
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1192.9 1020 62.5
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1173.3 1053 62.3
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1135.6 1068 59.9
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1127.1 864 68.4
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1115.5 1250 53.0
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.9e-310 1069.3 738 74.9
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 3.0e-308 1062.0 907 62.7
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.1e-299 1033.5 902 63.0
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 2.5e-286 989.2 558 91.6
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 9.4e-278 960.7 726 70.8
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 2.0e-275 953.0 1084 49.8
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 2.8e-274 949.1 968 57.2
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.4e-273 946.0 1097 48.2
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.8e-255 885.6 1087 46.4
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 3.6e-253 879.0 628 74.4
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.3e-247 859.8 825 58.8
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 9.2e-241 837.8 1042 46.2
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 7.3e-238 828.2 1081 44.1
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.1e-220 771.2 774 58.4
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 1.5e-219 767.3 417 94.5
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 1.7e-207 727.2 575 68.2
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.5e-206 724.2 565 68.3
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 2.9e-202 709.9 515 71.5
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 2.8e-197 693.3 570 66.1
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 2.5e-190 670.2 702 54.4
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 1.7e-178 630.9 1223 34.8
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 9.4e-177 625.2 526 64.6
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 4.3e-174 616.3 811 44.9
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.4e-169 601.3 844 46.1
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 7.4e-158 562.4 385 75.3
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 9.8e-142 508.8 373 72.4
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.5e-126 458.4 346 69.1
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 7.5e-118 429.5 359 65.5
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 4.9e-117 426.8 387 58.4
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 4.1e-116 423.7 320 71.9
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 4.6e-115 420.2 349 65.6
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 9.9e-110 402.5 366 61.5
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 1.6e-99 368.6 275 68.7
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 3.5e-99 367.5 270 73.3
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 1.9e-89 335.1 178 94.9
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.9e-89 335.1 363 52.3
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 3.4e-78 297.7 228 66.7
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 7.4e-65 253.4 175 74.3
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 1.8e-58 232.3 143 78.3
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.9e-54 217.2 162 64.2
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 4.2e-52 211.1 139 74.1
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 1.0e-50 206.5 129 80.6
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 6.7e-50 203.8 103 99.0
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 9.7e-49 199.9 139 69.8
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.5e-46 191.4 108 87.0
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 5.0e-37 161.0 114 70.2
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 8.8e-34 150.2 85 83.5
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 7.5e-33 147.1 117 64.1
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.1e-31 141.7 87 74.7
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 5.3e-31 141.0 86 74.4
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 5.9e-30 137.5 86 75.6
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 1.7e-29 136.0 176 48.3
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 2.5e-28 132.1 168 47.0
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 1.6e-27 129.4 203 33.5
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 4.7e-27 127.9 111 63.1
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-26 124.8 92 68.5
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 8.8e-26 123.6 79 69.6
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 8.8e-26 123.6 79 73.4
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 2.2e-24 119.0 98 64.3
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 7.0e-23 114.0 87 70.1
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 5.2e-18 97.8 81 58.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 4.9e-16 91.3 82 57.3
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 4.9e-16 91.3 82 57.3
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 4.9e-16 91.3 100 51.0
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.6e-13 80.9 61 63.9
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.6e-13 80.9 61 63.9
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 3.3e-12 78.6 53 79.2
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 9.5e-12 77.0 49 73.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.4e-10 73.2 71 52.1
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 4.0e-10 71.6 58 62.1
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 1.2e-09 70.1 48 72.9
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.7e-08 66.2 47 61.7


User provided reference genes

Program Settings