Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 3.0e-184 648.3 310 100.0
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 2.9e-179 631.7 310 97.1
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 3.1e-173 611.7 310 92.9
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 3.5e-172 608.2 310 91.3
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 5.6e-170 600.9 310 91.6
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 8.0e-169 597.0 310 89.7
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 6.4e-166 587.4 310 88.1
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 6.4e-166 587.4 310 88.7
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 6.4e-166 587.4 310 88.1
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 2.8e-161 572.0 310 87.1
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 2.4e-157 558.9 308 84.7
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 2.4e-157 558.9 306 86.6
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 1.3e-155 553.1 311 85.2
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 5.6e-154 547.7 309 82.2
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 8.3e-150 533.9 291 88.0
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 1.2e-145 520.0 310 79.0
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 1.6e-140 503.1 303 73.9
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 7.8e-140 500.7 307 73.3
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 1.7e-139 499.6 309 72.5
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 7.3e-138 494.2 304 72.4
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 9.6e-138 493.8 309 71.2
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 9.6e-138 493.8 304 72.0
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 3.6e-137 491.9 304 72.4
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 6.2e-137 491.1 307 71.3
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 3.1e-136 488.8 305 71.5
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 4.0e-136 488.4 303 71.6
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 4.0e-136 488.4 303 71.6
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 4.0e-136 488.4 303 71.6
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 1.2e-135 486.9 307 71.3
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 1.2e-135 486.9 307 70.0
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 2.0e-135 486.1 305 71.5
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 2.6e-135 485.7 307 70.4
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 4.4e-135 485.0 307 70.7
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 9.9e-135 483.8 304 71.1
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 1.3e-134 483.4 307 71.3
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 1.3e-134 483.4 307 71.3
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 1.7e-134 483.0 304 71.7
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 2.2e-134 482.6 307 70.0
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 4.9e-134 481.5 309 69.9
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 1.4e-133 479.9 304 71.4
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 5.4e-133 478.0 300 72.7
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 5.4e-133 478.0 332 65.7
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 9.3e-133 477.2 306 70.3
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 1.2e-132 476.9 307 68.1
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 1.6e-132 476.5 304 68.8
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 2.7e-132 475.7 307 69.7
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 2.7e-132 475.7 304 69.1
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 4.6e-132 474.9 317 67.8
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 1.0e-131 473.8 304 70.4
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 1.3e-131 473.4 305 71.8
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 1.7e-131 473.0 308 68.8
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 3.0e-131 472.2 309 71.5
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 5.1e-131 471.5 305 71.5
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 6.6e-131 471.1 305 71.8
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 6.6e-131 471.1 300 69.3
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 8.7e-131 470.7 307 68.4
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 8.7e-131 470.7 307 69.7
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 1.1e-130 470.3 305 70.5
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 1.1e-130 470.3 307 69.4
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 1.9e-130 469.5 305 70.2
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 2.5e-130 469.2 307 67.4
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 4.3e-130 468.4 307 68.4
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 7.3e-130 467.6 307 69.7
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 7.3e-130 467.6 300 70.3
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 9.6e-130 467.2 313 67.7
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.3e-129 466.8 304 70.7
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 1.6e-129 466.5 309 69.9
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 1.8e-128 463.0 307 67.4
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 1.8e-128 463.0 290 71.0
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 3.1e-128 462.2 307 69.1
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 4.0e-128 461.8 307 67.1
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 4.0e-128 461.8 303 70.0
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 6.9e-128 461.1 305 68.9
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 1.2e-127 460.3 305 69.2
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 1.2e-127 460.3 304 68.8
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 1.2e-127 460.3 303 68.6
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 2.6e-127 459.1 303 68.6
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 3.4e-127 458.8 312 67.0
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 4.5e-127 458.4 303 69.6
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 5.8e-127 458.0 308 67.5
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 9.9e-127 457.2 303 67.0
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 9.9e-127 457.2 303 67.0
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 9.9e-127 457.2 302 70.5
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 4.9e-126 454.9 302 68.9
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 8.4e-126 454.1 307 66.8
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 1.1e-125 453.8 333 62.8
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 1.4e-125 453.4 307 67.1
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 1.6e-124 449.9 300 66.7
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 1.6e-124 449.9 308 66.9
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 2.7e-124 449.1 307 67.4
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 2.7e-124 449.1 307 66.8
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 1.8e-123 446.4 307 68.1
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 3.0e-123 445.7 306 67.0
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 1.5e-122 443.4 307 65.5
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.9e-122 443.0 348 60.1
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.6e-121 439.9 304 66.4
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 4.0e-120 435.3 309 65.7
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 2.6e-119 432.6 305 63.9
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 4.9e-118 428.3 253 78.7
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 4.9e-118 428.3 304 63.5
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 2.4e-117 426.0 311 63.7
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 1.6e-116 423.3 307 67.4
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.8e-115 419.9 301 63.8
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 2.3e-115 419.5 313 69.3
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 6.7e-115 417.9 301 62.8
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 1.5e-114 416.8 321 62.6
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 4.6e-108 395.2 260 69.2
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 1.5e-106 390.2 303 62.0
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 2.2e-105 386.3 297 61.6
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 3.7e-105 385.6 307 60.3
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 6.3e-105 384.8 300 60.7
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 3.4e-103 379.0 301 60.5
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 2.5e-101 372.9 299 59.5
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 3.6e-100 369.0 250 66.0
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 8.7e-99 364.4 309 54.0
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 3.1e-96 355.9 299 55.9
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 3.1e-96 355.9 301 55.5
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 3.8e-94 349.0 250 62.0
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 3.3e-90 335.9 305 56.1
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 3.1e-88 329.3 233 67.4
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 9.1e-88 327.8 302 51.0
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 9.1e-88 327.8 307 51.1
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 6.1e-84 315.1 218 66.5
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 2.2e-81 306.6 197 70.6
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 3.6e-76 289.3 170 78.2
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 8.0e-76 288.1 185 71.4
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 5.7e-74 282.0 182 68.7
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 1.5e-66 257.3 177 66.7
CAN.G397.3 Capsicum annuum HOM05D005095 ORTHO05D006156 1.1e-64 251.1 186 63.4
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 1.0e-62 244.6 169 61.5
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 5.5e-61 238.8 117 94.9
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 8.9e-51 204.9 143 65.0
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 3.4e-50 203.0 133 65.4
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 9.8e-50 201.4 130 70.0
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 1.1e-48 198.0 172 58.7
MCO16G241 Micromonas commoda HOM05D005095 ORTHO05D006156 2.8e-44 183.3 273 41.0
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 1.7e-41 174.1 159 59.1
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 3.0e-38 163.3 113 64.6
Zm00001eb312570 Zea mays HOM05D005095 ORTHO05D006156 1.2e-36 157.9 121 57.0
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 2.8e-36 156.8 129 59.7
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 9.2e-32 141.7 123 64.2
VMungo0720G1002 Vigna mungo HOM05D005095 ORTHO05D006156 4.4e-26 122.9 87 59.8
TAR628G0764 Trochodendron aralioides HOM05D005095 ORTHO05D006156 2.6e-18 97.1 71 59.2
Prupe.3G199100 Prunus persica HOM05D005095 ORTHO05D006156 4.2e-16 89.7 61 57.4
Zm00001eb198060 Zea mays HOM05D005095 ORTHO05D006156 5.4e-16 89.4 62 61.3
Sabra14G0058200 Salix brachista HOM05D005095 ORTHO05D006156 1.1e-11 75.1 101 46.5
MD04G1094600 Malus domestica HOM05D005095 ORTHO05D245281 4.5e-10 69.7 47 63.8
BcaC06g33893 Brassica carinata HOM05D005095 ORTHO05D092937 1.7e-09 67.8 35 88.6
Pp3c4_390 Physcomitrium patens HOM05D005095 ORTHO05D006156 1.1e-08 65.1 55 49.1
Migut.D02384 Erythranthe guttata HOM05D000115 ORTHO05D001535 3.9e-06 56.6 73 37.0
Migut.D02385 Erythranthe guttata HOM05D000115 ORTHO05D001535 3.9e-06 56.6 73 37.0
SGA_v2.0_scaffold92G28132 Striga asiatica HOM05D000115 ORTHO05D001535 3.9e-06 56.6 73 38.4
Migut.N02438 Erythranthe guttata HOM05D000115 ORTHO05D001535 6.7e-06 55.8 73 37.0
unitig_27.g25024 Utricularia gibba HOM05D000115 ORTHO05D001535 6.7e-06 55.8 73 37.0
MSTRG.12395 Avicennia marina HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 37.0
MCO11G322 Micromonas commoda HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 37.0
Oeu048826.3 Olea europaea HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 37.0
SGA_v2.0_scaffold268G46197 Striga asiatica HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 37.0


User provided reference genes

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