Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 3.2e-201 704.9 361 100.0
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 1.9e-193 679.1 355 97.5
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 2.6e-187 658.7 355 94.4
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 6.0e-184 647.5 355 93.5
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 6.2e-181 637.5 355 91.8
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.7e-178 629.4 359 91.1
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 3.1e-172 608.6 349 89.7
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 2.0e-171 605.9 356 87.9
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.7e-170 602.8 349 89.4
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.7e-170 602.8 356 87.6
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.9e-166 589.3 358 84.9
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 3.3e-166 588.6 358 84.6
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 4.3e-166 588.2 357 84.9
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 4.5e-163 578.2 356 84.3
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.1e-161 573.5 342 86.8
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 3.2e-161 572.0 358 83.5
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 4.4e-150 535.0 363 78.0
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 2.9e-130 469.2 365 69.0
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 7.2e-129 464.5 355 68.7
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 5.2e-127 458.4 336 71.1
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 3.4e-126 455.7 362 66.6
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 7.5e-126 454.5 353 67.4
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 9.8e-126 454.1 346 68.5
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.7e-125 453.4 341 70.4
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.7e-125 453.4 335 69.9
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 1.7e-125 453.4 345 69.3
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 3.7e-125 452.2 337 70.0
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.7e-125 452.2 340 70.3
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.9e-125 451.8 340 70.3
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 6.3e-125 451.4 335 69.9
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 8.3e-125 451.1 346 67.9
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 4.1e-124 448.7 335 69.3
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 4.1e-124 448.7 346 67.9
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 2.0e-123 446.4 354 67.5
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 4.5e-123 445.3 336 68.8
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.0e-122 444.1 357 66.4
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 1.7e-122 443.4 350 66.6
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 2.9e-122 442.6 360 66.7
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 3.8e-122 442.2 363 66.1
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.5e-121 440.3 336 68.5
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.1e-120 436.4 341 66.9
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 2.8e-120 436.0 347 66.3
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 2.3e-119 433.0 342 65.5
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.2e-118 430.6 359 63.8
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 3.4e-118 429.1 342 64.9
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 5.7e-118 428.3 349 65.3
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 1.7e-117 426.8 412 57.8
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 8.3e-117 424.5 350 62.3
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.1e-116 424.1 326 70.2
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 4.1e-116 422.2 395 58.7
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 5.4e-116 421.8 336 65.5
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.6e-115 420.2 336 64.9
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 4.6e-115 418.7 348 62.9
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 5.9e-115 418.3 338 64.8
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.0e-114 417.5 348 62.4
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 2.3e-114 416.4 337 63.8
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 3.0e-114 416.0 350 62.3
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 3.9e-114 415.6 347 63.7
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 3.9e-114 415.6 342 64.9
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 6.6e-114 414.8 348 63.8
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 6.6e-114 414.8 336 64.0
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 1.9e-113 413.3 338 64.2
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 1.9e-113 413.3 348 61.8
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 4.3e-113 412.1 340 63.5
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 1.4e-111 407.1 335 63.3
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.8e-111 406.8 337 63.2
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 4.0e-111 405.6 367 61.0
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 8.9e-111 404.4 364 61.0
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 3.4e-110 402.5 338 61.5
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 2.2e-109 399.8 333 62.5
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.9e-108 396.7 335 62.4
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 7.0e-108 394.8 347 60.2
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 1.2e-107 394.0 338 62.4
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 2.3e-106 389.8 324 64.2
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 3.0e-106 389.4 336 60.4
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 5.0e-106 388.7 402 55.0
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 1.5e-105 387.1 366 58.2
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 1.9e-105 386.7 347 62.0
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 1.2e-104 384.0 361 57.6
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 3.6e-104 382.5 227 85.5
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 3.1e-103 379.4 371 56.6
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 6.8e-103 378.3 356 59.8
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 5.8e-102 375.2 357 60.8
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 5.8e-102 375.2 355 60.3
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 9.8e-102 374.4 295 65.1
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.4e-100 369.8 371 59.3
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 2.4e-100 369.8 344 58.7
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.2e-99 367.5 351 56.4
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.2e-99 367.5 348 59.2
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 3.5e-99 365.9 323 61.0
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 4.6e-99 365.5 324 59.3
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 7.8e-99 364.8 369 55.0
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.0e-98 364.4 344 56.1
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.3e-98 364.0 347 58.5
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.9e-98 362.5 344 54.9
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 4.3e-97 359.0 329 59.6
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.6e-96 357.1 282 68.8
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 9.9e-94 347.8 337 58.2
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.3e-93 347.4 332 57.8
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.2e-93 346.7 281 67.6
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.8e-93 345.9 266 66.9
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 7.8e-91 338.2 338 58.0
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.3e-90 337.4 344 52.0
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.5e-89 334.0 292 61.3
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.6e-88 330.5 356 54.5
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 2.1e-88 330.1 350 53.7
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.9e-84 317.0 345 53.3
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 2.6e-78 296.6 270 58.5
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.6e-72 277.3 334 52.1
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.0e-62 243.8 311 48.9
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 1.0e-53 214.9 378 39.9
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 6.1e-51 205.7 372 36.6
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 7.9e-51 205.3 133 78.2
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 3.3e-49 199.9 154 66.9
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 6.3e-48 195.7 135 72.6
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 9.4e-44 181.8 121 73.6
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 9.7e-41 171.8 261 41.0
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 1.1e-39 168.3 111 85.6
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.7e-37 161.0 359 32.6
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.4e-26 124.8 88 73.9
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 8.2e-24 115.5 102 62.7
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 7.2e-20 102.4 90 61.1
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.7e-19 100.5 78 66.7
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 5.4e-15 86.3 152 36.8
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 9.8e-09 65.5 106 38.7
Aa31sc80G40 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.2e-06 58.5 87 44.8


User provided reference genes

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