Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 4.4e-107 391.3 202 100.0
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 2.5e-94 349.0 202 90.1
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 4.5e-88 328.2 200 83.5
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.5e-86 323.2 202 83.2
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.9e-86 322.8 202 84.2
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 2.0e-75 286.2 202 74.3
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 2.7e-72 275.8 202 70.3
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 2.7e-72 275.8 202 70.3
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 1.0e-71 273.9 202 69.8
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 4.0e-68 261.9 202 68.3
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 1.0e-63 247.3 199 67.3
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.6e-61 240.0 202 59.4
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.5e-59 233.4 201 58.2
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 3.4e-59 232.3 202 57.9
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 4.4e-59 231.9 202 57.9
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 4.3e-54 215.3 187 66.3
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 1.4e-49 200.3 202 48.5
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 2.1e-48 196.4 199 47.2
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.3e-47 193.7 199 46.7
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 8.6e-47 191.0 193 52.8
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 2.5e-46 189.5 202 45.5
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 9.6e-46 187.6 201 48.8
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 4.7e-45 185.3 202 45.0
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 1.1e-44 184.1 199 45.2
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 6.8e-44 181.4 199 43.7
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 1.2e-43 180.6 199 43.7
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.2e-43 180.6 202 44.1
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 1.5e-43 180.3 202 43.6
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.6e-43 179.5 202 43.6
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 9.9e-43 177.6 198 42.9
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 1.3e-42 177.2 197 43.7
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.9e-42 176.0 200 44.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 2.1e-40 169.9 199 41.7
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 2.1e-40 169.9 199 42.2
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 3.5e-40 169.1 199 42.2
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 4.6e-40 168.7 198 42.9
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 7.8e-40 167.9 202 41.1
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.0e-39 167.5 201 41.8
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 1.0e-39 167.5 201 41.8
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.0e-39 167.5 202 41.6
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 2.3e-39 166.4 199 41.7
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 3.9e-39 165.6 202 41.6
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.9e-39 165.6 198 40.9
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.1e-39 165.2 202 40.6
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.1e-38 164.1 198 40.9
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.5e-38 163.7 198 40.9
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.5e-38 163.7 198 40.9
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 2.5e-38 162.9 200 42.0
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.3e-38 162.2 198 40.4
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 4.3e-38 162.2 200 41.0
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 7.3e-38 161.4 198 40.9
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 9.6e-38 161.0 199 39.7
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 2.8e-37 159.5 199 43.7
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 2.8e-37 159.5 199 40.7
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 4.8e-37 158.7 199 40.2
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.4e-36 157.1 200 37.5
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 4.0e-36 155.6 108 73.1
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 2.0e-35 153.3 184 39.7
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 3.4e-35 152.5 163 52.8
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.3e-34 150.6 199 38.7
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 2.2e-34 149.8 199 39.2
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 3.8e-34 149.1 200 39.5
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.1e-33 147.5 195 36.9
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 7.1e-33 144.8 131 61.8
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 7.1e-33 144.8 131 61.8
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 2.3e-31 139.8 215 34.9
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.9e-30 136.7 196 37.2
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 3.3e-30 136.0 272 30.5
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 5.6e-30 135.2 197 31.0
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 8.1e-29 131.3 199 35.7
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 7.6e-27 124.8 103 67.0
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 7.6e-27 124.8 103 66.0
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 1.7e-26 123.6 103 66.0
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 2.9e-26 122.9 104 67.3
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 4.9e-26 122.1 103 66.0
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 4.2e-25 119.0 103 65.0
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 5.4e-25 118.6 190 33.7
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.6e-24 117.1 195 33.3
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 1.3e-23 114.0 103 62.1
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 1.5e-22 110.5 198 32.3
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 1.5e-22 110.5 163 35.6
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 2.5e-22 109.8 194 32.5
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 8.1e-21 104.8 200 30.0
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 1.1e-20 104.4 107 50.5
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.8e-20 103.6 199 29.1
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 6.9e-20 101.7 199 29.6
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 4.5e-19 99.0 86 48.8
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 5.8e-19 98.6 86 47.7
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 5.8e-19 98.6 143 37.1
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 1.1e-17 94.4 107 46.7
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 1.1e-17 94.4 140 37.1
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.9e-17 93.6 186 31.2
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 5.5e-17 92.0 91 42.9
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 9.3e-17 91.3 132 37.9
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 1.6e-16 90.5 57 64.9
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 2.7e-16 89.7 81 49.4
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 6.0e-16 88.6 107 43.0
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 6.0e-16 88.6 107 43.0
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 7.9e-16 88.2 107 42.1
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 1.0e-15 87.8 81 48.1
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 1.8e-15 87.0 107 44.9
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 1.8e-15 87.0 107 43.0
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 2.5e-14 83.2 57 56.1
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 2.5e-14 83.2 74 48.6
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 3.3e-14 82.8 68 69.1
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 4.3e-14 82.4 68 69.1
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 4.3e-14 82.4 68 69.1
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 9.6e-14 81.3 92 34.8
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 1.3e-13 80.9 56 57.1
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.3e-13 80.9 60 56.7
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 1.6e-13 80.5 113 42.5
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.6e-13 80.5 84 38.1
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 2.8e-13 79.7 62 50.0
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 2.8e-13 79.7 61 54.1
A03p65190 Brassica napus HOM05D024600 ORTHO05D004680 3.7e-13 79.3 63 69.8
A06p35970 Brassica napus HOM05D004264 ORTHO05D004680 4.8e-13 79.0 106 50.9
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 8.2e-13 78.2 61 47.5
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 1.1e-12 77.8 60 53.3
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 1.4e-12 77.4 68 67.6
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 1.4e-12 77.4 89 55.1
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 3.1e-12 76.3 107 37.4
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 4.1e-12 75.9 68 66.2
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 4.1e-12 75.9 74 43.2
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 5.3e-12 75.5 107 36.4
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 5.3e-12 75.5 107 36.4
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 6.9e-12 75.1 107 38.3
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 6.9e-12 75.1 181 29.3
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.2e-11 74.3 107 38.3
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 2.0e-11 73.6 58 55.2
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 2.0e-11 73.6 107 38.3
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.0e-11 73.6 107 36.4
A03p36320 Brassica napus HOM05D024600 ORTHO05D004680 4.5e-11 72.4 69 62.3
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.5e-11 72.4 107 37.4
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 7.6e-11 71.6 107 37.4
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 2.2e-10 70.1 66 50.0
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.9e-10 69.7 107 36.4
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 2.9e-10 69.7 107 36.4
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 2.9e-10 69.7 107 38.3
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 6.5e-10 68.6 52 51.9
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 6.5e-10 68.6 52 51.9
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 8.4e-10 68.2 57 54.4
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 8.4e-10 68.2 108 34.3
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 1.1e-09 67.8 165 27.9
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 1.1e-09 67.8 107 36.4
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 1.1e-09 67.8 102 35.3
A05p35220 Brassica napus HOM05D024600 ORTHO05D004680 3.2e-09 66.2 58 60.3
C09p21930 Brassica napus HOM05D024600 ORTHO05D004680 4.2e-09 65.9 58 60.3
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 1.2e-08 64.3 107 34.6
A05p35200 Brassica napus HOM05D004264 ORTHO05D004680 1.2e-08 64.3 49 73.5
BolC3t16664H Brassica oleracea HOM05D004264 ORTHO05D004680 1.2e-08 64.3 35 85.7
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 2.7e-08 63.2 195 20.5
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 3.5e-08 62.8 100 33.0
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 1.0e-07 61.2 90 38.9
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 5.1e-07 58.9 124 31.5
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 5.1e-07 58.9 105 28.6
C09p21940 Brassica napus HOM05D004264 ORTHO05D004680 8.7e-07 58.2 44 72.7
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.7e-07 58.2 113 31.9
BolC9t57328H Brassica oleracea HOM05D024600 ORTHO05D004680 1.9e-06 57.0 64 56.2
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 1.9e-06 57.0 107 34.6
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.3e-06 56.2 115 31.3
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 4.3e-06 55.8 107 31.8


User provided reference genes

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