Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G08610 Arabidopsis thaliana HOM05D007303 ORTHO05D009231 1.7e-31 138.7 66 100.0
AL3G19590 Arabidopsis lyrata HOM05D007303 ORTHO05D009231 4.8e-31 137.1 66 98.5
BcaB04g18583 Brassica carinata HOM05D007303 ORTHO05D009231 8.3e-31 136.3 66 98.5
BcaC05g29598 Brassica carinata HOM05D007303 ORTHO05D009231 8.3e-31 136.3 66 98.5
A05p40170 Brassica napus HOM05D007303 ORTHO05D009231 8.3e-31 136.3 66 98.5
CARHR082910 Cardamine hirsuta HOM05D007303 ORTHO05D009231 1.4e-30 135.6 66 97.0
BcaC09g47979 Brassica carinata HOM05D007303 ORTHO05D009231 1.8e-30 135.2 66 97.0
C05p59250 Brassica napus HOM05D007303 ORTHO05D009231 1.8e-30 135.2 66 97.0
BolC1t05499H Brassica oleracea HOM05D007303 ORTHO05D009231 1.8e-30 135.2 66 97.0
BolC5t34572H Brassica oleracea HOM05D007303 ORTHO05D009231 1.8e-30 135.2 66 97.0
Thhalv10021979m.g Eutrema salsugineum HOM05D007303 ORTHO05D009231 2.4e-30 134.8 66 97.0
BcaC01g04187 Brassica carinata HOM05D007303 ORTHO05D009231 3.1e-30 134.4 66 97.0
BolC3t16676H Brassica oleracea HOM05D007303 ORTHO05D009231 3.1e-30 134.4 66 97.0
BraA01t04340Z Brassica rapa HOM05D007303 ORTHO05D009231 5.3e-30 133.7 66 95.5
BraA03t12812Z Brassica rapa HOM05D007303 ORTHO05D009231 7.0e-30 133.3 66 95.5
Carub.0003s0774 Capsella rubella HOM05D007303 ORTHO05D009231 2.0e-29 131.7 66 92.4
BcaB04g21249 Brassica carinata HOM05D007303 ORTHO05D009231 1.3e-28 129.0 67 94.0
Aa31LG5G18650 Aethionema arabicum HOM05D007303 ORTHO05D009231 2.5e-27 124.8 66 89.4
Aa31LG5G11350 Aethionema arabicum HOM05D007303 ORTHO05D009231 4.2e-27 124.0 66 87.9
THA.LOC104816152 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 4.7e-26 120.6 61 88.5
RcHm_v2.0_Chr3g0459881 Rosa chinensis HOM05D007303 ORTHO05D009231 1.4e-25 119.0 65 81.5
Prupe.6G297800 Prunus persica HOM05D007303 ORTHO05D009231 1.8e-25 118.6 65 81.5
Sp3g07060 Schrenkiella parvula HOM05D007303 ORTHO05D009231 2.3e-25 118.2 55 98.2
FAN05G5278 Fragaria x ananassa HOM05D007303 ORTHO05D009231 5.2e-25 117.1 65 80.0
FAN09G2915 Fragaria x ananassa HOM05D007303 ORTHO05D009231 5.2e-25 117.1 65 80.0
TWI74G1491 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 5.2e-25 117.1 66 81.8
COL.COLO4_05680 Corchorus olitorius HOM05D007303 ORTHO05D009231 1.2e-24 115.9 65 78.5
FvH4_6g09420 Fragaria vesca HOM05D007303 ORTHO05D009231 1.2e-24 115.9 65 78.5
FAN14G3833 Fragaria x ananassa HOM05D007303 ORTHO05D009231 1.2e-24 115.9 65 78.5
THA.LOC104820511 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 3.4e-24 114.4 57 89.5
Hund19736 Selenicereus undatus HOM05D007303 ORTHO05D009231 4.4e-24 114.0 62 83.9
Nitab4.5_0001215g0100 Nicotiana tabacum HOM05D007303 ORTHO05D009231 5.7e-24 113.6 65 80.0
TWI53G0471 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 5.7e-24 113.6 66 78.8
Haze_21228 Corylus avellana HOM05D007303 ORTHO05D009231 7.5e-24 113.2 62 82.3
CANSAT83G0001 Cannabis sativa HOM05D007303 ORTHO05D009231 9.8e-24 112.8 62 83.9
CAN.G65.102 Capsicum annuum HOM05D007303 ORTHO05D009231 9.8e-24 112.8 65 80.0
Migut.L02050 Erythranthe guttata HOM05D007303 ORTHO05D009231 9.8e-24 112.8 64 76.6
MD04G1177900 Malus domestica HOM05D007303 ORTHO05D009231 9.8e-24 112.8 62 82.3
MD12G1193500 Malus domestica HOM05D007303 ORTHO05D009231 9.8e-24 112.8 62 82.3
Duzib151G0876 Durio zibethinus HOM05D007303 ORTHO05D009231 1.3e-23 112.5 65 76.9
Oeu026929.1 Olea europaea HOM05D007303 ORTHO05D009231 2.2e-23 111.7 65 76.9
Hma1.2p1_0174F.1_g076630 Hydrangea macrophylla HOM05D007303 ORTHO05D009231 2.8e-23 111.3 65 83.1
Ca_23107_v3 Cicer arietinum L. HOM05D007303 ORTHO05D009231 3.7e-23 110.9 66 77.3
Manes.09G121600 Manihot esculenta HOM05D007303 ORTHO05D009231 3.7e-23 110.9 64 78.1
Cfa017000 Carpinus fangiana HOM05D007303 ORTHO05D009231 4.8e-23 110.5 62 80.6
Cpa.g.sc0.70 Carica papaya HOM05D007303 ORTHO05D009231 6.3e-23 110.2 66 75.8
Sopen10g027350 Solanum pennellii HOM05D007303 ORTHO05D009231 6.3e-23 110.2 65 76.9
PGSC0003DMG400027701 Solanum tuberosum HOM05D007303 ORTHO05D009231 6.3e-23 110.2 65 76.9
Thecc.04G147800 Theobroma cacao HOM05D007303 ORTHO05D009231 8.3e-23 109.8 65 76.9
TAR633G2342 Trochodendron aralioides HOM05D007303 ORTHO05D009231 8.3e-23 109.8 64 75.0
PGR031G1377 Punica granatum HOM05D007303 ORTHO05D009231 1.8e-22 108.6 65 76.9
AUR62006451 Chenopodium quinoa HOM05D007303 ORTHO05D009231 2.4e-22 108.2 58 82.8
Medtr8g005360 Medicago truncatula HOM05D007303 ORTHO05D009231 2.4e-22 108.2 62 77.4
SalBow4G1964 Salvia bowleyana HOM05D007303 ORTHO05D009231 3.1e-22 107.8 66 75.8
SalBow4G2888 Salvia bowleyana HOM05D007303 ORTHO05D009231 3.1e-22 107.8 66 75.8
Glyma.09G271600 Glycine max HOM05D007303 ORTHO05D009231 4.1e-22 107.5 66 75.8
Ah.15g089810 Amaranthus hybridus HOM05D007303 ORTHO05D009231 5.4e-22 107.1 58 82.8
CiPaw.10G166700 Carya illinoinensis HOM05D007303 ORTHO05D009231 5.4e-22 107.1 62 79.0
Glyma.18G217700 Glycine max HOM05D007303 ORTHO05D009231 5.4e-22 107.1 66 74.2
Lj3g0023771 Lotus japonicus HOM05D007303 ORTHO05D009231 5.4e-22 107.1 64 78.1
MELO3C025258.2 Cucumis melo HOM05D007303 ORTHO05D009231 7.0e-22 106.7 60 80.0
CsaV3_4G027390 Cucumis sativus L. HOM05D007303 ORTHO05D009231 7.0e-22 106.7 60 80.0
Oeu007820.2 Olea europaea HOM05D007303 ORTHO05D009231 7.0e-22 106.7 64 71.9
Gohir.A10G152200 Gossypium hirsutum HOM05D007303 ORTHO05D009231 9.1e-22 106.3 62 74.2
Gohir.A10G152700 Gossypium hirsutum HOM05D007303 ORTHO05D009231 9.1e-22 106.3 62 74.2
Gohir.D10G113500 Gossypium hirsutum HOM05D007303 ORTHO05D009231 9.1e-22 106.3 62 74.2
Gohir.D10G114000 Gossypium hirsutum HOM05D007303 ORTHO05D009231 9.1e-22 106.3 62 74.2
Gorai.011G125300 Gossypium raimondii HOM05D007303 ORTHO05D009231 9.1e-22 106.3 62 74.2
Gorai.011G125800 Gossypium raimondii HOM05D007303 ORTHO05D009231 9.1e-22 106.3 62 74.2
GSVIVG01010904001 Vitis vinifera HOM05D007303 ORTHO05D009231 1.2e-21 105.9 64 73.4
Eucgr.K01299 Eucalyptus grandis HOM05D007303 ORTHO05D009231 1.6e-21 105.5 65 73.8
ClCG04G006170 Citrullus lanatus HOM05D007303 ORTHO05D009231 2.0e-21 105.1 60 80.0
Sc20g0007240 Simmondsia chinensis HOM05D007303 ORTHO05D009231 3.5e-21 104.4 62 77.4
Psat6g005160 Pisum sativum HOM05D007303 ORTHO05D009231 4.5e-21 104.0 61 75.4
arahy.Tifrunner.gnm1.ann1.RL3GXR Arachis hypogaea HOM05D007303 ORTHO05D009231 5.9e-21 103.6 66 74.2
arahy.Tifrunner.gnm1.ann1.ZQ7RI8 Arachis hypogaea HOM05D007303 ORTHO05D009231 5.9e-21 103.6 66 74.2
Oeu035181.1 Olea europaea HOM05D007303 ORTHO05D009231 5.9e-21 103.6 58 77.6
Sed0004919 Sechium edule HOM05D007303 ORTHO05D009231 5.9e-21 103.6 64 75.0
Os05g0481600 Oryza sativa ssp. japonica HOM05D007303 ORTHO05D009231 1.3e-20 102.4 64 71.9
Phvul.008G079100 Phaseolus vulgaris HOM05D007303 ORTHO05D009231 1.3e-20 102.4 62 72.6
Cc06_g00200 Coffea canephora HOM05D007303 ORTHO05D009231 1.7e-20 102.1 60 75.0
Lsat_1_v5_gn_8_109701 Lactuca sativa HOM05D007303 ORTHO05D009231 2.3e-20 101.7 61 73.8
Duzib212G0558 Durio zibethinus HOM05D007303 ORTHO05D009231 2.9e-20 101.3 65 70.8
PSO384G4262 Papaver somniferum HOM05D007303 ORTHO05D009231 5.0e-20 100.5 66 69.7
ECA236G3381 Erigeron canadensis HOM05D007303 ORTHO05D009231 3.3e-19 97.8 61 73.8
DCAR_023961 Daucus carota HOM05D007303 ORTHO05D009231 2.1e-18 95.1 54 81.5
QL07p031324 Quercus lobata HOM05D007303 ORTHO05D009231 1.4e-17 92.4 64 68.8
SEGI_21984 Sequoiadendron giganteum HOM05D007303 ORTHO05D009231 5.2e-17 90.5 62 66.1
Potri.016G140900 Populus trichocarpa HOM05D007303 ORTHO05D009231 6.8e-17 90.1 58 67.2
Oeu028466.1 Olea europaea HOM05D007303 ORTHO05D009231 1.3e-15 85.9 68 60.3
CiPaw.01G273900 Carya illinoinensis HOM05D007303 ORTHO05D009231 2.0e-13 78.6 59 62.7
Cc09_g07100 Coffea canephora HOM05D007303 ORTHO05D009231 2.0e-13 78.6 65 61.5
A03p36440 Brassica napus HOM05D007303 ORTHO05D009231 7.8e-13 76.6 36 97.2
Manes.08G168000 Manihot esculenta HOM05D007303 ORTHO05D009231 3.9e-12 74.3 43 76.7
Cc00_g04100 Coffea canephora HOM05D007303 ORTHO05D009231 5.0e-12 73.9 65 58.5
Pp3c10_5690 Physcomitrium patens HOM05D007303 ORTHO05D009231 4.7e-10 67.4 53 52.8
Pp3c10_5720 Physcomitrium patens HOM05D007303 ORTHO05D009231 4.7e-10 67.4 53 52.8
CSS0019093 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 6.1e-10 67.0 36 86.1
MBI15_g31036_MAGBIO Magnolia biondii HOM05D007303 ORTHO05D009231 6.1e-10 67.0 40 70.0
Mapoly0148s0030 Marchantia polymorpha HOM05D007303 ORTHO05D009231 8.0e-10 66.6 55 54.5
Sabra04G0157400 Salix brachista HOM05D007303 ORTHO05D009231 1.4e-09 65.9 39 74.4
Zm00001eb290920 Zea mays HOM05D007303 ORTHO05D009231 1.4e-09 65.9 38 76.3
CBR_g5630 Chara braunii HOM05D007303 ORTHO05D009231 3.1e-09 64.7 55 52.7
CSS0017493 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 4.0e-09 64.3 36 80.6
CSS0048723 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 4.0e-09 64.3 36 80.6
Cc07_g13470 Coffea canephora HOM05D007303 ORTHO05D009231 3.2e-06 54.7 43 55.8


User provided reference genes

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