Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 2.4e-215 751.9 375 100.0
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 2.9e-213 745.0 375 98.9
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 5.6e-209 730.7 375 96.8
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 2.9e-205 718.4 375 95.7
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 5.3e-199 697.6 380 93.4
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 5.8e-198 694.1 380 91.8
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 6.9e-191 670.6 373 89.8
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 1.0e-189 666.8 379 88.9
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 2.3e-178 629.0 384 81.2
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 2.5e-164 582.4 378 76.2
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 8.0e-163 577.4 378 75.4
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 3.9e-162 575.1 378 75.7
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 4.1e-159 565.1 379 74.4
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 7.0e-159 564.3 380 75.5
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 1.1e-156 557.0 378 74.1
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 1.5e-156 556.6 384 73.4
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 1.9e-156 556.2 375 73.3
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.9e-156 556.2 375 73.3
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.2e-156 555.4 376 73.4
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 3.2e-156 555.4 378 74.6
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 4.2e-156 555.1 385 73.5
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.2e-156 555.1 376 73.4
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 7.2e-156 554.3 382 72.8
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.2e-155 553.5 381 74.0
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 2.7e-155 552.4 376 72.9
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 4.7e-155 551.6 381 72.4
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 6.1e-155 551.2 376 72.3
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 6.1e-155 551.2 384 73.4
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 1.4e-154 550.1 389 71.2
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 2.3e-154 549.3 379 73.4
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 4.0e-154 548.5 380 73.4
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 5.2e-154 548.1 381 73.0
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 5.2e-154 548.1 381 73.0
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 6.7e-154 547.7 381 73.5
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 3.3e-153 545.4 382 72.0
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 4.4e-153 545.0 383 72.8
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 5.7e-153 544.7 389 71.5
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 7.5e-153 544.3 383 72.6
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 1.7e-152 543.1 398 70.4
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 2.2e-152 542.7 360 75.0
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 8.3e-152 540.8 383 72.8
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 2.4e-151 539.3 385 70.4
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 2.4e-151 539.3 385 71.2
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 3.1e-151 538.9 386 71.2
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 3.1e-151 538.9 384 70.8
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 9.1e-151 537.3 385 70.1
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 1.2e-150 537.0 387 69.5
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 2.0e-150 536.2 391 70.8
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 2.7e-150 535.8 381 71.1
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 4.5e-150 535.0 389 70.2
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 5.9e-150 534.6 390 69.0
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 1.7e-149 533.1 390 68.2
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 2.9e-149 532.3 393 69.7
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 9.4e-148 527.3 382 69.1
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 2.7e-147 525.8 388 68.6
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 4.7e-147 525.0 377 69.5
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 4.7e-147 525.0 335 74.6
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 6.1e-147 524.6 385 68.6
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 6.1e-147 524.6 385 68.6
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 8.0e-147 524.2 428 64.7
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 2.3e-146 522.7 381 68.2
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 4.0e-146 521.9 335 74.0
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 5.2e-146 521.5 395 68.1
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 8.8e-146 520.8 299 81.9
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 2.6e-145 519.2 375 70.1
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 3.4e-145 518.8 389 68.6
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 2.2e-144 516.2 303 80.2
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 3.7e-144 515.4 389 68.4
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 8.3e-144 514.2 385 67.3
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 1.1e-143 513.8 388 67.3
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 5.4e-143 511.5 379 67.3
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 4.5e-142 508.4 456 59.6
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 1.0e-141 507.3 380 67.4
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 1.7e-141 506.5 379 69.1
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 2.3e-141 506.1 389 66.3
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 2.9e-141 505.8 377 67.6
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 3.8e-141 505.4 383 65.0
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 6.1e-139 498.0 421 64.1
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 8.0e-139 497.7 361 66.5
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 1.8e-138 496.5 380 64.5
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 6.3e-136 488.0 381 64.6
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 2.3e-133 479.6 380 64.7
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 5.0e-133 478.4 491 54.8
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 4.3e-132 475.3 379 63.9
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 5.6e-132 474.9 283 78.4
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 5.6e-132 474.9 378 64.6
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 7.3e-132 474.6 379 64.1
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 9.5e-132 474.2 390 63.6
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 2.8e-131 472.6 393 63.4
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 1.4e-127 460.3 296 74.3
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 7.0e-127 458.0 381 64.0
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 2.0e-126 456.4 306 68.3
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 5.0e-125 451.8 390 61.0
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 6.6e-125 451.4 390 61.0
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 4.3e-124 448.7 331 66.8
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 1.2e-123 447.2 228 95.2
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 1.7e-120 436.8 359 62.7
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 3.0e-117 426.0 213 96.7
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 3.0e-117 426.0 213 96.7
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 6.6e-117 424.9 213 96.2
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 2.0e-113 413.3 377 60.5
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 4.7e-107 392.1 316 64.9
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 5.4e-103 378.6 309 58.9
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 2.1e-102 376.7 340 55.0
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 6.6e-101 371.7 340 53.8
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 9.3e-95 351.3 293 55.3
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 3.0e-93 346.3 213 76.5
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.9e-92 343.6 245 70.2
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 5.6e-92 342.0 229 66.8
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 2.4e-82 310.1 291 50.2
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 5.3e-82 308.9 291 56.7
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 4.3e-76 289.3 230 62.6
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 2.9e-72 276.6 177 72.3
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 3.8e-72 276.2 285 46.7
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 4.6e-70 269.2 306 44.4
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 2.9e-64 250.0 278 45.0
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 8.5e-64 248.4 164 81.1
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 3.2e-63 246.5 157 76.4
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 5.0e-56 222.6 135 77.0
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 2.5e-39 167.2 161 49.1
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 1.5e-36 157.9 117 65.8
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 2.0e-33 147.5 168 51.8
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 5.9e-33 146.0 108 61.1
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 8.0e-30 135.6 97 66.0
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 2.3e-24 117.5 87 59.8
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 2.0e-20 104.4 64 78.1
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 4.9e-19 99.8 48 95.8
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 4.9e-19 99.8 48 95.8
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 3.2e-10 70.5 104 41.3
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 2.3e-08 64.3 43 72.1


User provided reference genes

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