Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 2.2e-167 592.4 353 100.0
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 7.4e-102 374.8 331 77.6
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.4e-92 344.0 381 63.5
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 2.0e-91 340.1 365 63.3
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 9.7e-86 321.2 330 61.5
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 2.0e-78 297.0 366 61.2
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 5.7e-62 242.3 350 47.4
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 2.9e-58 229.9 335 49.6
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 3.2e-57 226.5 256 57.8
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 3.6e-56 223.0 283 48.8
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 6.1e-56 222.2 283 48.8
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 4.1e-52 209.5 337 51.6
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.1e-44 184.9 336 45.8
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 6.8e-39 165.6 235 49.8
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 6.8e-39 165.6 235 49.8
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 2.8e-32 143.7 415 40.2
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.9e-25 120.9 70 74.3
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 3.7e-21 106.7 88 56.8
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 2.4e-20 104.0 91 52.7
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 5.4e-20 102.8 89 58.4
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 9.2e-20 102.1 88 59.1
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.2e-19 101.7 96 49.0
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.2e-19 101.7 96 49.0
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.2e-19 101.7 96 49.0
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.6e-19 101.3 106 51.9
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 4.6e-19 99.8 111 46.8
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 4.6e-19 99.8 111 46.8
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 3.0e-18 97.1 102 46.1
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 3.0e-18 97.1 102 46.1
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 6.6e-18 95.9 88 56.8
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.9e-17 94.4 61 65.6
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 3.3e-17 93.6 64 62.5
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 5.6e-17 92.8 95 52.6
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 5.6e-17 92.8 75 61.3
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 9.5e-17 92.0 102 47.1
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 9.5e-17 92.0 65 64.6
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.2e-16 91.7 84 58.3
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.2e-16 91.7 84 58.3
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 1.2e-16 91.7 94 52.1
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 1.2e-16 91.7 94 52.1
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 2.1e-16 90.9 64 60.9
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 2.1e-16 90.9 89 52.8
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.8e-16 90.5 68 64.7
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 3.6e-16 90.1 80 57.5
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 3.6e-16 90.1 95 51.6
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 4.7e-16 89.7 74 52.7
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.7e-16 89.7 53 73.6
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.7e-16 89.7 53 73.6
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 4.7e-16 89.7 53 73.6
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 4.7e-16 89.7 89 53.9
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 4.7e-16 89.7 87 51.7
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 4.7e-16 89.7 87 51.7
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 4.7e-16 89.7 87 51.7
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 4.7e-16 89.7 87 51.7
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 4.7e-16 89.7 87 51.7
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 4.7e-16 89.7 71 57.7
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 6.2e-16 89.4 100 47.0
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.1e-15 88.6 94 51.1
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.4e-15 88.2 57 68.4
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.8e-15 87.8 100 46.0
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.8e-15 87.8 85 52.9
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 1.8e-15 87.8 67 61.2
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 2.4e-15 87.4 64 64.1
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 3.1e-15 87.0 96 46.9
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.1e-15 87.0 94 50.0
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.1e-15 87.0 78 53.8
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 3.1e-15 87.0 65 60.0
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 4.0e-15 86.7 67 59.7
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 4.0e-15 86.7 67 58.2
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 4.0e-15 86.7 89 51.7
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 4.0e-15 86.7 54 64.8
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 5.2e-15 86.3 64 59.4
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 5.2e-15 86.3 54 68.5
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 5.2e-15 86.3 72 56.9
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 5.2e-15 86.3 71 56.3
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 6.8e-15 85.9 95 48.4
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 8.9e-15 85.5 62 61.3
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 8.9e-15 85.5 62 61.3
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 8.9e-15 85.5 62 61.3
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 8.9e-15 85.5 75 54.7
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.2e-14 85.1 57 66.7
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.5e-14 84.7 111 42.3
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 2.6e-14 84.0 71 59.2
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 4.4e-14 83.2 52 67.3
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 5.8e-14 82.8 95 52.6
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 7.6e-14 82.4 70 52.9
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 7.6e-14 82.4 87 47.1
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.9e-14 82.0 59 57.6
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.3e-13 81.6 66 53.0
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 2.2e-13 80.9 94 45.7
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 2.2e-13 80.9 64 62.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 2.9e-13 80.5 57 66.7
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 2.9e-13 80.5 70 58.6
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 2.9e-13 80.5 86 48.8
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.9e-13 80.5 61 62.3
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.9e-13 80.5 59 55.9
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 6.4e-13 79.3 70 58.6
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 6.4e-13 79.3 65 56.9
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 8.4e-13 79.0 52 65.4
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.1e-12 78.6 89 47.2
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.1e-12 78.6 77 49.4
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 1.4e-12 78.2 83 54.2
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.4e-12 78.2 55 63.6
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.6e-11 74.7 87 42.5
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.6e-11 74.7 78 52.6
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 2.1e-11 74.3 52 65.4
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 2.1e-11 74.3 87 46.0
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 4.6e-11 73.2 102 41.2
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.0e-10 72.0 51 64.7
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.0e-10 72.0 51 64.7
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.0e-10 72.0 39 74.4
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.0e-10 72.0 39 74.4
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 2.3e-10 70.9 52 61.5
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 3.9e-10 70.1 102 42.2
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 3.9e-10 70.1 79 45.6
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 3.9e-10 70.1 69 52.2
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 8.7e-10 68.9 102 40.2
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 1.5e-09 68.2 63 54.0
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 4.3e-09 66.6 76 44.7
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.2e-08 65.1 81 46.9
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.2e-08 65.1 47 61.7
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 2.1e-08 64.3 86 43.0
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 2.8e-08 63.9 74 44.6
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 4.7e-08 63.2 44 61.4
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 3.1e-07 60.5 65 46.2
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 3.1e-07 60.5 45 57.8
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 1.2e-06 58.5 49 55.1
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 2.0e-06 57.8 113 36.3
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 3.4e-06 57.0 104 36.5


User provided reference genes

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