Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.3e-285 985.7 509 100.0
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 5.0e-277 957.2 509 95.5
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 4.5e-270 934.1 510 95.1
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 8.3e-264 913.3 510 91.6
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 1.3e-261 906.0 510 91.0
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 5.6e-260 900.6 509 89.8
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 4.6e-254 880.9 508 87.6
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 1.7e-229 799.3 513 82.8
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 3.0e-229 798.5 515 82.9
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 7.3e-228 793.9 514 82.9
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 4.5e-225 784.6 508 79.7
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 1.8e-221 772.7 513 80.9
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 4.3e-220 768.1 513 80.5
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 2.1e-219 765.8 515 79.8
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 2.6e-217 758.8 512 79.7
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 5.8e-217 757.7 512 79.5
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 4.2e-215 751.5 511 76.5
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.0e-213 746.9 511 75.5
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 7.4e-212 740.7 511 75.0
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 4.8e-211 738.0 511 74.6
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.1e-210 736.9 513 75.0
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 1.5e-209 733.0 511 74.6
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 5.1e-205 718.0 510 72.5
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 5.9e-201 704.5 511 71.2
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 4.6e-198 694.9 509 70.9
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 1.5e-196 689.9 509 70.3
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.7e-195 686.4 511 71.2
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 1.1e-194 683.7 513 70.8
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.4e-194 683.3 508 70.5
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.8e-194 682.9 512 69.1
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 6.9e-194 681.0 519 69.0
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 9.1e-194 680.6 515 70.9
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 1.5e-193 679.9 513 70.4
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 7.7e-193 677.6 515 70.7
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.8e-192 675.2 508 69.7
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 5.0e-192 674.9 512 68.8
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 8.5e-192 674.1 512 68.8
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 1.1e-188 663.7 508 68.7
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 1.1e-188 663.7 513 68.4
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 2.4e-186 656.0 514 68.5
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 5.3e-186 654.8 510 67.6
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 2.6e-185 652.5 516 66.9
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 2.9e-184 649.0 516 67.6
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 2.5e-183 646.0 510 66.5
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 1.6e-182 643.3 516 66.5
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 1.4e-181 640.2 514 65.8
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 3.9e-181 638.6 520 65.0
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 5.2e-181 638.3 522 65.5
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 1.5e-180 636.7 522 65.5
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 2.6e-180 636.0 511 65.8
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.6e-180 636.0 511 67.5
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 2.6e-180 636.0 514 65.8
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 2.6e-180 636.0 505 66.3
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 4.4e-180 635.2 510 66.1
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 1.7e-179 633.3 507 65.9
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 3.7e-179 632.1 510 66.5
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 6.3e-179 631.3 512 66.4
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 1.1e-178 630.6 512 66.4
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.4e-178 629.4 512 66.4
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.3e-178 628.2 519 64.7
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 9.1e-178 627.5 513 66.1
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 2.6e-177 625.9 512 66.2
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 5.9e-177 624.8 517 66.7
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 7.7e-177 624.4 509 65.2
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.9e-176 622.5 517 65.6
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 2.9e-176 622.5 512 65.6
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 8.5e-176 620.9 515 64.9
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 8.5e-176 620.9 511 64.4
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 8.5e-176 620.9 512 65.8
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 2.5e-175 619.4 510 66.7
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 4.2e-175 618.6 512 65.2
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 9.4e-175 617.5 533 65.5
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.2e-174 617.1 509 65.6
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 3.6e-174 615.5 512 66.2
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 4.0e-173 612.1 514 65.4
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 1.5e-172 610.1 514 65.6
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 5.7e-172 608.2 516 64.7
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.3e-171 607.1 512 64.1
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.7e-171 605.5 511 64.0
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 7.0e-170 601.3 517 62.3
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 9.1e-170 600.9 514 64.6
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 3.5e-169 599.0 517 64.4
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 1.3e-168 597.0 520 64.8
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.3e-168 597.0 519 62.2
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 2.5e-167 592.8 515 62.5
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 9.4e-167 590.9 465 67.1
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 1.0e-165 587.4 510 63.9
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 2.0e-164 583.2 527 61.5
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 4.4e-164 582.0 525 62.1
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.2e-163 579.7 510 63.3
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 6.3e-163 578.2 527 60.2
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.1e-162 577.4 522 61.9
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 3.1e-162 575.9 502 61.6
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 5.4e-162 575.1 517 61.7
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 5.0e-160 568.5 472 64.6
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 2.5e-159 566.2 515 60.4
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 6.1e-158 561.6 491 62.3
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 3.5e-153 545.8 523 58.9
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 2.5e-151 539.7 511 58.7
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 8.0e-150 534.6 534 57.1
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 1.4e-149 533.9 531 56.7
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 6.8e-149 531.6 523 57.7
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 2.3e-141 506.5 509 57.2
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 2.0e-140 503.4 458 60.7
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 1.7e-139 500.4 490 57.6
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 2.5e-135 486.5 488 57.4
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 4.0e-133 479.2 488 56.1
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 5.2e-133 478.8 488 55.9
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 8.6e-128 461.5 477 55.8
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 5.6e-127 458.8 532 50.4
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 8.4e-123 444.9 511 51.9
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.8e-117 427.2 510 50.4
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 4.4e-116 422.5 501 49.9
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 7.6e-116 421.8 530 48.9
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 9.6e-111 404.8 290 71.0
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 6.2e-110 402.1 293 68.3
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 2.1e-102 377.1 493 48.3
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 3.0e-88 330.1 551 41.6
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.0e-83 315.1 513 42.9
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 3.5e-60 236.9 285 49.1
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 4.5e-52 209.9 340 40.3
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 2.5e-50 204.1 202 57.4
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 8.0e-41 172.6 289 39.8
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 4.7e-25 120.2 99 65.7
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 4.4e-23 113.6 518 25.3
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-22 112.1 81 65.4
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 6.4e-22 109.8 458 27.1
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 2.5e-18 97.8 71 71.8
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.7e-14 84.0 56 69.6
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.4e-13 82.0 79 49.4
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.1e-12 78.2 63 57.1
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 2.7e-12 77.8 181 32.0
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 8.9e-08 62.8 49 71.4


User provided reference genes

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