Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 3.2e-133 478.4 242 100.0
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 3.9e-118 428.3 242 89.3
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 3.7e-113 411.8 242 83.5
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 4.1e-112 408.3 242 85.1
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 6.0e-111 404.4 244 86.1
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 1.0e-110 403.7 242 82.6
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 1.7e-110 402.9 242 83.9
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 2.9e-105 385.6 242 79.3
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 2.9e-105 385.6 242 79.3
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 1.4e-104 383.3 242 79.8
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 1.4e-104 383.3 242 79.8
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 1.9e-104 382.9 242 79.3
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 7.8e-103 377.5 265 74.0
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.5e-85 320.1 244 66.4
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 8.4e-81 304.3 183 82.0
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.5e-69 266.9 246 58.5
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 1.6e-68 263.5 243 51.0
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 7.6e-66 254.6 242 50.4
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 1.3e-65 253.8 244 51.6
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 2.3e-62 243.0 243 49.0
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 3.0e-62 242.7 243 49.8
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 3.0e-62 242.7 243 46.5
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 8.7e-62 241.1 244 48.8
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 3.3e-61 239.2 243 46.1
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 4.3e-61 238.8 244 48.4
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 9.6e-61 237.7 244 49.2
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 2.1e-60 236.5 243 46.9
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 2.1e-60 236.5 244 46.7
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 4.1e-59 232.3 245 49.4
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 6.9e-59 231.5 242 48.3
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 3.4e-58 229.2 243 45.7
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 2.9e-57 226.1 242 47.1
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 5.0e-57 225.3 243 42.8
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 1.1e-56 224.2 243 44.9
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 1.9e-56 223.4 244 44.7
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 2.5e-56 223.0 243 45.3
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 5.5e-56 221.9 243 45.3
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 7.2e-56 221.5 243 44.4
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.6e-55 220.3 243 44.9
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 2.1e-55 219.9 244 42.2
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 2.1e-55 219.9 243 44.0
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 7.9e-55 218.0 243 44.0
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 2.3e-54 216.5 244 45.1
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 5.1e-54 215.3 244 43.4
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 6.7e-54 214.9 243 42.4
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.1e-53 214.2 243 44.0
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 3.3e-53 212.6 244 44.7
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 9.7e-53 211.1 243 41.6
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 1.3e-52 210.7 243 47.3
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 2.2e-52 209.9 247 40.5
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 8.2e-52 208.0 247 39.7
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 8.2e-52 208.0 243 42.8
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 1.4e-51 207.2 244 43.9
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 4.1e-51 205.7 243 41.6
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 9.0e-51 204.5 243 42.4
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 3.4e-50 202.6 244 41.0
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 4.5e-50 202.2 243 43.2
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 5.9e-50 201.8 245 40.8
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 5.0e-49 198.7 243 42.0
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 1.4e-48 197.2 242 41.3
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 1.9e-48 196.8 246 40.7
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 1.9e-48 196.8 242 40.9
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 4.2e-48 195.7 245 43.7
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 6.1e-47 191.8 243 42.8
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 7.9e-47 191.4 188 51.1
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 1.4e-46 190.7 248 42.7
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 2.3e-46 189.9 243 42.0
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 3.0e-46 189.5 202 48.5
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 1.1e-45 187.6 238 43.3
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.5e-45 187.2 231 42.4
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 1.7e-44 183.7 244 41.4
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.4e-43 180.6 250 41.6
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 1.4e-43 180.6 250 41.6
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 1.8e-43 180.3 244 42.2
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 1.8e-43 180.3 244 40.6
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 2.4e-43 179.9 248 41.5
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 2.4e-43 179.9 243 39.1
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 9.1e-43 177.9 221 39.4
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.2e-42 177.6 250 41.2
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 4.5e-42 175.6 243 37.0
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 1.3e-41 174.1 206 44.2
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 2.9e-41 172.9 292 32.2
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 8.5e-41 171.4 174 48.9
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 4.2e-40 169.1 201 42.3
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 9.4e-40 167.9 242 36.4
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 2.6e-37 159.8 169 48.5
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 4.5e-34 149.1 241 33.6
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 4.5e-34 149.1 175 44.0
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 1.7e-33 147.1 243 32.5
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 1.2e-31 141.0 173 43.9
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 2.7e-31 139.8 243 32.1
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 1.5e-29 134.0 251 32.3
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 7.5e-29 131.7 203 37.4
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 3.1e-27 126.3 166 36.7
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 5.9e-26 122.1 247 30.0
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 9.4e-24 114.8 237 29.1
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 3.7e-20 102.8 238 29.4
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 2.0e-13 80.5 95 41.1
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.2e-07 61.2 72 37.5


User provided reference genes

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