Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 3.2e-133 478.4 236 100.0
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 1.4e-128 463.0 236 96.2
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 9.6e-122 440.3 236 89.8
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 2.1e-121 439.1 236 89.4
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 4.8e-113 411.4 237 86.1
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 7.3e-106 387.5 238 81.9
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 2.1e-105 386.0 237 82.3
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 1.4e-101 373.2 236 80.9
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 5.4e-101 371.3 236 80.5
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 5.4e-101 371.3 236 80.9
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 9.3e-101 370.5 236 80.9
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 3.0e-99 365.5 232 77.6
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 3.1e-96 355.5 225 81.8
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 2.6e-87 325.9 216 74.1
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 7.6e-87 324.3 193 85.5
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 2.9e-86 322.4 236 68.2
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 4.2e-85 318.5 215 73.0
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 7.9e-84 314.3 225 70.2
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 2.3e-83 312.8 214 72.4
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 3.9e-83 312.0 216 73.6
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 5.1e-83 311.6 206 74.3
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 5.1e-83 311.6 221 70.1
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 5.1e-83 311.6 221 70.1
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 1.1e-82 310.5 235 66.4
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 1.1e-82 310.5 231 68.8
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 1.5e-82 310.1 236 67.4
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 1.9e-82 309.7 233 67.8
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 1.9e-82 309.7 221 70.1
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 3.3e-82 308.9 232 64.7
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 4.3e-82 308.5 221 70.1
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 5.7e-82 308.1 214 70.6
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 5.7e-82 308.1 214 70.6
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 9.7e-82 307.4 231 69.7
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 1.6e-81 306.6 240 66.2
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 8.2e-81 304.3 232 65.9
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 8.2e-81 304.3 199 74.9
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 3.1e-80 302.4 231 64.9
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 1.2e-79 300.4 214 70.1
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 2.6e-79 299.3 217 69.1
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 4.5e-79 298.5 233 66.1
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 1.3e-78 297.0 217 69.1
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 2.2e-78 296.2 217 68.7
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 3.2e-77 292.4 214 69.6
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 4.6e-76 288.5 210 68.6
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 6.1e-76 288.1 215 68.4
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 6.1e-76 288.1 211 69.7
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 6.1e-76 288.1 222 65.3
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 7.9e-76 287.7 232 64.2
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 1.0e-75 287.3 229 63.8
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 1.8e-75 286.6 218 68.3
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 1.8e-75 286.6 238 63.4
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 1.8e-75 286.6 212 71.2
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 3.9e-75 285.4 231 64.5
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 3.9e-75 285.4 238 63.9
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 3.9e-75 285.4 213 69.0
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 5.1e-75 285.0 216 67.1
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 8.8e-75 284.3 201 70.1
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 1.1e-74 283.9 229 65.9
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 1.5e-74 283.5 213 68.1
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 2.0e-74 283.1 222 64.9
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 2.0e-74 283.1 238 63.0
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 2.5e-74 282.7 231 63.6
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 4.3e-74 282.0 217 67.7
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 5.7e-74 281.6 207 68.1
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 2.2e-73 279.6 234 63.2
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 3.7e-73 278.9 199 70.4
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 1.1e-72 277.3 244 60.7
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 1.8e-72 276.6 232 64.7
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 3.1e-72 275.8 209 68.9
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 4.1e-72 275.4 229 62.4
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 2.6e-71 272.7 233 61.8
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 2.9e-70 269.2 217 63.1
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 3.8e-70 268.9 201 65.7
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 8.5e-70 267.7 220 63.6
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 7.2e-69 264.6 213 63.8
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 1.6e-68 263.5 203 67.0
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 4.7e-68 261.9 193 66.8
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 4.7e-68 261.9 205 66.3
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 8.8e-67 257.7 233 60.1
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 2.0e-66 256.5 159 75.5
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 2.8e-65 252.7 280 49.6
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 5.3e-64 248.4 160 74.4
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 1.0e-62 244.2 171 67.8
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 1.7e-62 243.4 156 75.0
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 2.2e-62 243.0 165 73.9
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 3.8e-62 242.3 228 58.8
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 1.9e-61 240.0 155 74.8
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 1.2e-60 237.3 229 56.8
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 2.0e-58 229.9 170 70.0
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 2.8e-57 226.1 154 71.4
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 1.8e-56 223.4 178 64.6
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 5.9e-55 218.4 177 63.3
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 2.9e-54 216.1 136 75.7
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 1.0e-51 207.6 220 54.5
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 2.5e-45 186.4 189 53.4
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 4.9e-41 172.2 113 75.2
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 3.3e-37 159.5 131 59.5
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 1.6e-36 157.1 130 63.8
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 5.9e-31 138.7 120 63.3
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 6.8e-27 125.2 94 66.0
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 2.4e-24 116.7 84 70.2
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 1.0e-22 111.3 77 70.1
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 1.1e-21 107.8 80 68.8
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 3.6e-20 102.8 74 68.9
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 6.4e-17 92.0 66 69.7
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 1.5e-10 70.9 72 58.3
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 2.2e-09 67.0 50 66.0
Potri.007G083100 Populus trichocarpa HOM05D007255 ORTHO05D009052 8.6e-06 55.1 35 71.4


User provided reference genes

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