Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G07230 Arabidopsis thaliana HOM05D008218 ORTHO05D010347 3.7e-17 90.5 47 100.0
Carub.0003s0676 Capsella rubella HOM05D008218 ORTHO05D010347 3.1e-16 87.4 47 97.9
AL3G18510 Arabidopsis lyrata HOM05D008218 ORTHO05D010347 4.1e-16 87.0 47 97.9
Thhalv10021897m.g Eutrema salsugineum HOM05D008218 ORTHO05D010347 5.3e-16 86.7 47 95.7
CARHR081880 Cardamine hirsuta HOM05D008218 ORTHO05D010347 7.0e-16 86.3 47 95.7
Aa31LG5G17820 Aethionema arabicum HOM05D008218 ORTHO05D010347 5.9e-15 83.2 47 91.5
Lsat_1_v5_gn_2_120021 Lactuca sativa HOM05D009582 ORTHO05D010347 2.5e-13 77.8 46 82.6
TWI36G0894 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 2.1e-12 74.7 48 83.3
Prupe.8G198600 Prunus persica HOM05D008218 ORTHO05D010347 8.0e-12 72.8 48 81.2
RcHm_v2.0_Chr6g0284071 Rosa chinensis HOM05D008218 ORTHO05D010347 8.0e-12 72.8 48 81.2
Solyc06g063390.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 1.4e-11 72.0 49 81.6
A03p35150 Brassica napus HOM05D008218 ORTHO05D010347 2.3e-11 71.2 47 83.0
Solyc06g063400.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 5.2e-11 70.1 49 77.6
PSO170G1121 Papaver somniferum HOM05D008218 ORTHO05D010347 6.8e-11 69.7 47 76.6
PSO170G3918 Papaver somniferum HOM05D008218 ORTHO05D010347 6.8e-11 69.7 47 76.6
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 8.8e-11 69.3 47 83.0
Phvul.008G131550 Phaseolus vulgaris HOM05D008218 ORTHO05D010347 1.2e-10 68.9 48 77.1
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 2.0e-10 68.2 47 80.9
Hma1.2p1_0149F.1_g066410 Hydrangea macrophylla HOM05D008218 ORTHO05D010347 2.0e-10 68.2 48 77.1
PSO357G0222 Papaver somniferum HOM05D008218 ORTHO05D010347 2.6e-10 67.8 47 74.5
Mapoly0087s0005 Marchantia polymorpha HOM05D008218 ORTHO05D010347 3.4e-10 67.4 48 75.0
PSO017G0111 Papaver somniferum HOM05D008218 ORTHO05D010347 5.7e-10 66.6 47 74.5
FAN15G3347 Fragaria x ananassa HOM05D008218 ORTHO05D010347 2.2e-09 64.7 43 79.1
COL.COLO4_08652 Corchorus olitorius HOM05D008218 ORTHO05D010347 4.8e-09 63.5 48 75.0
Gohir.A07G161100 Gossypium hirsutum HOM05D008218 ORTHO05D010347 4.8e-09 63.5 48 75.0
Gohir.D07G164600 Gossypium hirsutum HOM05D008218 ORTHO05D010347 4.8e-09 63.5 48 75.0
Gohir.D11G145833 Gossypium hirsutum HOM05D008218 ORTHO05D010347 4.8e-09 63.5 48 77.1
Potri.002G246300 Populus trichocarpa HOM05D008218 ORTHO05D010347 4.8e-09 63.5 48 75.0
Thecc.01G219400 Theobroma cacao HOM05D008218 ORTHO05D010347 4.8e-09 63.5 48 77.1
CiPaw.13G048900 Carya illinoinensis HOM05D008218 ORTHO05D010347 6.3e-09 63.2 48 75.0
FAN27G2427 Fragaria x ananassa HOM05D008218 ORTHO05D010347 6.3e-09 63.2 43 76.7
Gohir.A11G139700 Gossypium hirsutum HOM05D008218 ORTHO05D010347 1.4e-08 62.0 47 78.7
Thecc.05G251000 Theobroma cacao HOM05D008218 ORTHO05D010347 1.8e-08 61.6 48 72.9
PGSC0003DMG400007753 Solanum tuberosum HOM05D008218 ORTHO05D010347 2.4e-08 61.2 44 75.0
TWI18G1398 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 2.4e-08 61.2 48 70.8
TWI75G0809 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 2.4e-08 61.2 48 72.9
THA.LOC104818972 Tarenaya hassleriana HOM05D008218 ORTHO05D010347 4.1e-08 60.5 48 72.9
THA.LOC104822489 Tarenaya hassleriana HOM05D008218 ORTHO05D010347 4.1e-08 60.5 48 72.9
Duzib211G0660 Durio zibethinus HOM05D008218 ORTHO05D010347 5.4e-08 60.1 48 72.9
Nitab4.5_0013864g0040 Nicotiana tabacum HOM05D008218 ORTHO05D010347 5.4e-08 60.1 47 72.3
FAN24G2161 Fragaria x ananassa HOM05D008218 ORTHO05D010347 7.0e-08 59.7 68 55.9
Manes.12G047600 Manihot esculenta HOM05D008218 ORTHO05D010347 7.0e-08 59.7 48 70.8
PGR044G2382 Punica granatum HOM05D008218 ORTHO05D010347 4.5e-07 57.0 48 70.8
Duzib133G0946 Durio zibethinus HOM05D008218 ORTHO05D010347 5.9e-07 56.6 48 70.8
Manes.13G049700 Manihot esculenta HOM05D008218 ORTHO05D010347 5.9e-07 56.6 48 70.8
Nn7g36571 Nelumbo nucifera HOM05D008218 ORTHO05D010347 5.9e-07 56.6 48 68.8
Os12g0405700 Oryza sativa ssp. japonica HOM05D008218 ORTHO05D010347 7.7e-07 56.2 49 73.5
Migut.D02504 Erythranthe guttata HOM05D008218 ORTHO05D010347 1.0e-06 55.8 48 70.8
CAN.G874.7 Capsicum annuum HOM05D008218 ORTHO05D010347 1.3e-06 55.5 48 68.8
Gohir.A07G093000 Gossypium hirsutum HOM05D008218 ORTHO05D010347 1.3e-06 55.5 48 68.8
Potri.014G191300 Populus trichocarpa HOM05D008218 ORTHO05D010347 1.3e-06 55.5 48 66.7
Solyc06g083340.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 1.3e-06 55.5 48 68.8
PGSC0003DMG400020101 Solanum tuberosum HOM05D008218 ORTHO05D010347 1.3e-06 55.5 48 68.8
CiPaw.14G038700 Carya illinoinensis HOM05D008218 ORTHO05D010347 1.7e-06 55.1 48 66.7
CsaV3_3G030050 Cucumis sativus L. HOM05D008218 ORTHO05D010347 2.2e-06 54.7 48 64.6
Lalb_Chr19g0125871 Lupinus albus HOM05D008218 ORTHO05D010347 2.9e-06 54.3 48 64.6
Pp3c20_8300 Physcomitrium patens HOM05D008218 ORTHO05D010347 2.9e-06 54.3 50 70.0
Pp3c23_15470 Physcomitrium patens HOM05D008218 ORTHO05D010347 5.0e-06 53.5 50 64.0
Hund18437 Selenicereus undatus HOM05D008218 ORTHO05D010347 5.0e-06 53.5 48 66.7
Hma1.2p1_0226F.1_g095360 Hydrangea macrophylla HOM05D008218 ORTHO05D010347 6.5e-06 53.1 48 66.7


User provided reference genes

Program Settings