Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 1.4e-50 203.0 129 100.0
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.6e-49 199.5 129 98.4
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 1.6e-46 189.5 129 95.3
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 4.0e-45 184.9 129 91.5
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 5.2e-45 184.5 129 80.6
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 5.2e-45 184.5 129 80.6
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 2.6e-44 182.2 129 78.3
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 2.6e-44 182.2 129 78.3
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 2.6e-44 182.2 129 78.3
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 2.6e-44 182.2 129 78.3
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 4.4e-44 181.4 129 79.8
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 9.7e-44 180.3 129 79.1
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 5.3e-42 174.5 130 90.0
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 4.5e-41 171.4 129 86.8
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 2.2e-40 169.1 100 88.0
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 4.7e-38 161.4 98 83.7
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 6.1e-38 161.0 100 86.0
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 8.0e-38 160.6 99 85.9
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 1.0e-37 160.2 98 82.7
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 1.4e-37 159.8 98 85.7
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 2.3e-37 159.1 100 82.0
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 2.3e-37 159.1 100 82.0
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 2.3e-37 159.1 100 82.0
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 3.0e-37 158.7 101 80.2
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 6.8e-37 157.5 96 86.5
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 1.2e-36 156.8 94 84.0
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 1.2e-36 156.8 95 85.3
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 1.5e-36 156.4 98 80.6
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 2.6e-36 155.6 99 78.8
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 2.6e-36 155.6 101 82.2
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 5.7e-36 154.5 100 81.0
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 9.8e-36 153.7 99 81.8
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 1.7e-35 152.9 98 79.6
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 2.2e-35 152.5 99 78.8
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 2.2e-35 152.5 101 81.2
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 2.2e-35 152.5 95 81.1
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 2.2e-35 152.5 100 80.0
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 3.7e-35 151.8 100 79.0
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 3.7e-35 151.8 100 80.0
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 3.7e-35 151.8 101 81.2
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 3.7e-35 151.8 94 81.9
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.8e-35 151.4 98 76.5
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 4.8e-35 151.4 97 79.4
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 6.3e-35 151.0 100 77.0
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 8.3e-35 150.6 100 79.0
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.1e-34 150.2 101 78.2
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.1e-34 150.2 99 79.8
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 1.1e-34 150.2 99 80.8
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 2.4e-34 149.1 99 77.8
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 3.1e-34 148.7 98 75.5
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.1e-34 148.7 98 75.5
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.1e-34 148.7 98 75.5
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.1e-34 148.7 98 75.5
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 3.1e-34 148.7 100 75.0
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 4.1e-34 148.3 97 79.4
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 7.0e-34 147.5 99 76.8
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 9.1e-34 147.1 100 76.0
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 9.1e-34 147.1 99 76.8
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 9.1e-34 147.1 100 76.0
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 1.2e-33 146.7 99 75.8
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.6e-33 146.4 100 75.0
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.6e-33 146.4 100 75.0
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 2.0e-33 146.0 100 77.0
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 2.7e-33 145.6 96 78.1
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 3.5e-33 145.2 97 79.4
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 5.9e-33 144.4 101 74.3
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 7.7e-33 144.1 105 71.4
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 1.3e-32 143.3 96 76.0
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 2.9e-32 142.1 100 71.0
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 3.8e-32 141.7 95 75.8
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 5.0e-32 141.4 98 76.5
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 8.6e-32 140.6 96 75.0
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 1.5e-31 139.8 99 73.7
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 2.5e-31 139.0 94 75.5
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 2.5e-31 139.0 94 75.5
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 4.2e-31 138.3 100 71.0
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 1.2e-30 136.7 95 74.7
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 1.6e-30 136.3 101 74.3
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 2.1e-30 136.0 101 70.3
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 2.1e-30 136.0 97 71.1
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 2.1e-30 136.0 96 69.8
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 2.8e-30 135.6 100 69.0
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 4.7e-30 134.8 97 72.2
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.8e-29 132.9 101 70.3
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 5.2e-29 131.3 101 70.3
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 5.2e-29 131.3 99 72.7
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 1.2e-28 130.2 101 72.3
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 1.2e-28 130.2 101 72.3
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 4.4e-28 128.3 102 66.7
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 7.5e-28 127.5 96 71.9
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 1.3e-27 126.7 105 65.7
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 1.7e-27 126.3 96 70.8
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 2.2e-27 125.9 98 65.3
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 2.8e-27 125.6 101 68.3
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 3.7e-27 125.2 87 73.6
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 2.4e-26 122.5 101 63.4
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 2.4e-26 122.5 105 66.7
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 4.1e-26 121.7 102 62.7
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 7.0e-26 120.9 92 68.5
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 7.0e-26 120.9 92 68.5
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 2.0e-25 119.4 100 67.0
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 2.7e-25 119.0 101 68.3
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 3.5e-25 118.6 95 62.1
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 5.9e-25 117.9 78 79.5
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 2.9e-24 115.5 101 63.4
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 2.1e-22 109.4 97 54.6
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.4e-21 106.7 78 73.1
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 1.8e-21 106.3 102 55.9
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 6.8e-21 104.4 95 58.9
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 3.4e-20 102.1 100 55.0
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 7.5e-20 100.9 97 53.6
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 1.7e-19 99.8 107 61.7
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 3.0e-16 89.0 79 62.0
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 8.6e-16 87.4 105 49.5
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 1.1e-15 87.0 100 51.0
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 2.1e-14 82.8 92 50.0
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 8.9e-13 77.4 96 50.0
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 1.3e-08 63.5 58 56.9
SalBow3G3394 Salvia bowleyana HOM05D003064 ORTHO05D001733 2.1e-06 56.2 64 39.1
Ca_03208_v3 Cicer arietinum L. HOM05D003064 ORTHO05D001733 3.6e-06 55.5 90 37.8
MD11G1012700 Malus domestica HOM05D003064 ORTHO05D001733 3.6e-06 55.5 94 38.3
Medtr2g062220 Medicago truncatula HOM05D003064 ORTHO05D001733 6.2e-06 54.7 90 37.8


User provided reference genes

Program Settings