Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 3.7e-60 234.6 109 100.0
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 6.9e-59 230.3 109 97.2
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.6e-58 228.4 109 96.3
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.0e-57 226.5 109 95.4
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.6e-55 219.2 107 93.5
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.3e-54 215.3 107 92.5
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 8.8e-54 213.4 106 91.5
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 1.1e-53 213.0 104 93.3
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.1e-53 213.0 106 91.5
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.1e-53 213.0 106 91.5
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 90.6
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 90.6
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 90.6
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 90.6
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 90.6
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 90.6
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 90.6
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 90.6
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 90.6
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.6e-53 211.8 106 90.6
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.6e-53 211.8 106 90.6
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 2.6e-53 211.8 106 90.6
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 5.7e-53 210.7 106 89.6
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 7.4e-53 210.3 106 88.7
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 2.2e-52 208.8 106 87.7
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 2.2e-52 208.8 106 87.7
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 2.8e-52 208.4 103 90.3
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 1.1e-51 206.5 105 88.6
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 4.5e-50 201.1 105 85.7
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 7.7e-50 200.3 100 90.0
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 7.7e-50 200.3 100 90.0
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.0e-49 197.6 105 84.8
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 1.4e-48 196.1 107 82.2
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 7.2e-48 193.7 105 81.9
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 9.4e-48 193.4 107 80.4
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 1.2e-47 193.0 105 81.9
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 4.7e-47 191.0 107 79.4
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 6.1e-47 190.7 107 80.4
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 6.1e-47 190.7 103 82.5
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.0e-46 189.9 105 81.0
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.8e-46 189.1 105 79.0
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 3.9e-46 188.0 106 76.4
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 5.2e-46 187.6 105 79.0
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 5.2e-46 187.6 105 80.0
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 5.2e-46 187.6 106 77.4
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 79.4
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 2.0e-45 185.7 105 81.0
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 2.0e-45 185.7 107 79.4
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 2.6e-45 185.3 105 80.0
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 2.6e-45 185.3 106 79.2
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 3.3e-45 184.9 105 79.0
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 4.4e-45 184.5 103 80.6
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 4.4e-45 184.5 101 82.2
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 5.7e-45 184.1 109 74.3
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 5.7e-45 184.1 105 78.1
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 9.7e-45 183.3 105 77.1
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 9.7e-45 183.3 102 79.4
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.3e-44 183.0 103 79.6
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 79.0
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 2.2e-44 182.2 103 79.6
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 2.8e-44 181.8 103 80.6
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 3.7e-44 181.4 105 77.1
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 4.8e-44 181.0 104 77.9
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 4.8e-44 181.0 102 78.4
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 4.8e-44 181.0 105 79.0
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 6.3e-44 180.6 101 79.2
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 6.3e-44 180.6 105 74.3
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 8.2e-44 180.3 107 75.7
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.4e-43 179.5 105 76.2
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 75.2
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.8e-43 179.1 107 75.7
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.4e-43 178.7 101 80.2
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 75.2
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 78.1
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 78.1
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 77.1
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 76.2
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 4.1e-43 177.9 103 78.6
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 5.3e-43 177.6 105 77.1
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.3e-43 177.6 105 77.1
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.3e-43 177.6 105 77.1
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.3e-43 177.6 105 78.1
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 5.3e-43 177.6 103 78.6
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 5.3e-43 177.6 105 72.4
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 7.0e-43 177.2 106 73.6
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 7.0e-43 177.2 103 75.7
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 7.0e-43 177.2 103 75.7
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 7.0e-43 177.2 105 75.2
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 9.1e-43 176.8 107 75.7
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.2e-42 176.4 101 76.2
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.2e-42 176.4 105 71.4
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.6e-42 176.0 106 73.6
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.6e-42 176.0 103 75.7
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 2.0e-42 175.6 109 74.3
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 70.5
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 74.0
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.6e-42 175.3 106 71.7
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 3.5e-42 174.9 102 75.5
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 3.5e-42 174.9 103 74.8
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 3.5e-42 174.9 103 74.8
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 4.5e-42 174.5 109 73.4
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 7.7e-42 173.7 102 74.5
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 7.7e-42 173.7 105 72.4
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.0e-41 173.3 101 75.2
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.7e-41 172.6 103 72.8
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 1.7e-41 172.6 106 69.8
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.7e-41 172.6 102 72.5
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 1.7e-41 172.6 103 74.8
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 2.9e-41 171.8 103 71.8
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.9e-41 171.8 101 75.2
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 3.8e-41 171.4 105 72.4
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.8e-41 171.4 105 72.4
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 3.8e-41 171.4 111 67.6
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 5.0e-41 171.0 105 72.4
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 5.0e-41 171.0 103 75.7
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 6.5e-41 170.6 105 71.4
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 8.5e-41 170.2 109 72.5
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 8.5e-41 170.2 103 73.8
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.1e-40 169.9 102 75.5
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.1e-40 169.9 101 74.3
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.5e-40 169.5 103 71.8
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 1.9e-40 169.1 103 69.9
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.9e-40 169.1 103 72.8
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 2.5e-40 168.7 103 72.8
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 2.5e-40 168.7 103 69.9
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.2e-40 168.3 103 70.9
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 4.2e-40 167.9 108 72.2
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 5.5e-40 167.5 103 71.8
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 5.5e-40 167.5 101 73.3
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 5.5e-40 167.5 97 74.2
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 9.4e-40 166.8 104 72.1
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.7e-39 165.2 103 70.9
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 3.6e-39 164.9 106 69.8
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 4.7e-39 164.5 103 69.9
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 4.7e-39 164.5 100 76.0
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 8.0e-39 163.7 100 75.0
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 3.0e-38 161.8 107 68.2
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 5.2e-38 161.0 96 70.8
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 2.6e-37 158.7 97 70.1
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 2.6e-37 158.7 101 68.3
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 65.7
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 4.4e-37 157.9 102 67.6
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 7.5e-37 157.1 88 77.3
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 7.5e-37 157.1 86 77.9
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 7.5e-37 157.1 97 68.0
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.2e-36 155.6 172 48.8
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 5.3e-35 151.0 85 80.0
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.2e-34 149.8 79 84.8
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.0e-33 146.7 105 62.9
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.2e-32 141.7 94 64.9
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.2e-32 141.4 97 61.9
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.2e-31 139.8 95 63.2
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 4.7e-31 137.9 103 60.2
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 4.0e-30 134.8 76 75.0
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 2.8e-28 128.6 72 73.6
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 8.3e-28 127.1 103 57.3
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 4.1e-27 124.8 78 70.5
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 8.6e-25 117.1 99 47.5
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 6.1e-23 110.9 69 73.9
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.2e-21 106.7 61 80.3
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 2.6e-21 105.5 92 50.0
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.7e-20 102.8 71 66.2
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 3.5e-18 95.1 59 72.9
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 7.8e-18 94.0 45 88.9
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 1.0e-17 93.6 61 67.2
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 1.9e-16 89.4 90 42.2
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 2.5e-16 89.0 67 61.2
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 4.3e-16 88.2 65 66.2
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 2.8e-15 85.5 57 66.7
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 8.0e-15 84.0 59 67.8
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 8.0e-15 84.0 54 66.7
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.0e-14 83.6 55 63.6
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 1.0e-14 83.6 61 62.3
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 1.0e-14 83.6 44 84.1
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 2.3e-14 82.4 41 80.5
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 6.8e-14 80.9 52 65.4
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 1.5e-13 79.7 61 62.3
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 9.5e-08 60.5 87 35.6


User provided reference genes

Program Settings