Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 1.3e-93 346.3 167 100.0
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 3.6e-91 338.2 171 96.5
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 4.1e-87 324.7 169 92.3
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 2.3e-85 318.9 169 91.7
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 5.1e-85 317.8 169 91.1
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 5.1e-85 317.8 169 91.1
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 6.6e-85 317.4 169 91.1
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 1.1e-84 316.6 169 91.1
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 1.1e-84 316.6 169 91.1
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 1.5e-84 316.2 169 90.5
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 7.3e-84 313.9 169 91.1
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 2.1e-83 312.4 170 91.2
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 1.2e-65 253.4 166 74.7
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 1.3e-51 206.8 167 64.1
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 1.2e-41 173.7 162 54.3
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 2.6e-41 172.6 154 53.9
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 2.6e-41 172.6 154 53.9
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 3.4e-41 172.2 162 53.7
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 5.9e-41 171.4 139 58.3
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 7.6e-41 171.0 165 53.9
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 1.0e-40 170.6 167 53.3
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 1.7e-40 169.9 167 52.1
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 2.9e-40 169.1 170 52.9
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 1.1e-39 167.2 166 53.0
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 1.4e-39 166.8 141 56.7
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 1.9e-39 166.4 156 50.6
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 2.5e-39 166.0 166 51.8
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 2.5e-39 166.0 169 52.1
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 5.5e-39 164.9 138 58.0
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 7.2e-39 164.5 135 57.8
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 9.3e-39 164.1 135 57.8
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 1.2e-38 163.7 135 57.8
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 1.2e-38 163.7 148 54.1
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 2.7e-38 162.5 142 54.2
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 2.7e-38 162.5 170 47.1
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 2.7e-38 162.5 166 53.6
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 2.7e-38 162.5 166 53.6
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 6.1e-38 161.4 149 51.7
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 6.1e-38 161.4 165 50.9
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 6.1e-38 161.4 159 50.3
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 1.0e-37 160.6 164 50.6
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 1.0e-37 160.6 166 53.6
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 1.0e-37 160.6 156 52.6
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 1.8e-37 159.8 165 50.9
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 1.8e-37 159.8 141 56.0
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 1.8e-37 159.8 153 51.6
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 2.3e-37 159.5 158 51.3
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 3.0e-37 159.1 138 56.5
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 5.1e-37 158.3 139 54.0
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 5.1e-37 158.3 155 52.9
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 6.7e-37 157.9 146 52.1
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 8.8e-37 157.5 146 52.1
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 1.1e-36 157.1 144 51.4
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.1e-36 157.1 151 51.7
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 1.1e-36 157.1 160 50.0
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 1.1e-36 157.1 160 51.9
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 1.1e-36 157.1 135 56.3
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 1.5e-36 156.8 166 50.0
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 1.9e-36 156.4 147 51.0
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 3.3e-36 155.6 136 55.1
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 4.3e-36 155.2 138 56.5
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 4.3e-36 155.2 154 51.9
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 5.7e-36 154.8 169 49.7
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 7.4e-36 154.5 146 51.4
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 1.3e-35 153.7 145 53.8
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 1.3e-35 153.7 166 48.8
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 2.2e-35 152.9 141 53.9
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 3.7e-35 152.1 127 56.7
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 3.7e-35 152.1 144 50.7
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 6.3e-35 151.4 138 54.3
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 1.4e-34 150.2 137 52.6
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 1.8e-34 149.8 160 49.4
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 1.8e-34 149.8 166 49.4
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 3.1e-34 149.1 160 49.4
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 4.1e-34 148.7 143 52.4
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 5.3e-34 148.3 148 50.0
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 2.0e-33 146.4 120 55.8
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 2.0e-33 146.4 158 46.2
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 4.5e-33 145.2 163 48.5
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 4.5e-33 145.2 137 51.1
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 4.5e-33 145.2 120 55.0
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 7.7e-33 144.4 117 60.7
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 1.3e-32 143.7 132 53.8
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 6.5e-32 141.4 137 51.1
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 1.9e-31 139.8 144 51.4
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 4.2e-31 138.7 144 49.3
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 4.7e-30 135.2 136 49.3
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 6.7e-29 131.3 115 53.0
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 2.6e-28 129.4 128 49.2
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 2.2e-19 99.8 107 49.5
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 1.2e-17 94.0 158 36.7
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 5.5e-15 85.1 68 57.4
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 6.1e-14 81.6 106 40.6
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 1.0e-13 80.9 70 54.3
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 3.0e-13 79.3 68 57.4
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 5.2e-13 78.6 65 53.8
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 1.5e-12 77.0 106 39.6
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 7.5e-12 74.7 87 48.3


User provided reference genes

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