Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G05727 Arabidopsis thaliana HOM05D011267 ORTHO05D013190 3.0e-43 177.9 81 100.0
AL3G16430 Arabidopsis lyrata HOM05D011267 ORTHO05D013190 3.1e-40 167.9 81 93.8
BolC1t05675H Brassica oleracea HOM05D011267 ORTHO05D013190 2.0e-31 138.7 79 79.7
BraA01t04490Z Brassica rapa HOM05D011267 ORTHO05D013190 2.3e-30 135.2 79 78.5
CARHR080190 Cardamine hirsuta HOM05D011267 ORTHO05D013190 5.4e-24 114.0 79 69.6
AT3G05730 Arabidopsis thaliana HOM05D011267 ORTHO05D013190 7.8e-23 110.2 85 62.4
BraA05t22946Z Brassica rapa HOM05D011267 ORTHO05D013190 3.6e-20 101.3 90 60.0
Carub.0003s0509 Capsella rubella HOM05D011267 ORTHO05D013190 4.7e-20 100.9 85 64.7
BcaC05g29784 Brassica carinata HOM05D011267 ORTHO05D013190 8.0e-20 100.1 90 58.9
BcaC09g47845 Brassica carinata HOM05D011267 ORTHO05D013190 1.8e-19 99.0 90 60.0
BolC1t05673H Brassica oleracea HOM05D011267 ORTHO05D013190 1.8e-19 99.0 90 60.0
BraA01t04491Z Brassica rapa HOM05D011267 ORTHO05D013190 2.0e-18 95.5 90 56.7
CARHR080200 Cardamine hirsuta HOM05D011267 ORTHO05D013190 1.7e-17 92.4 91 56.0
BolC5t34808H Brassica oleracea HOM05D011267 ORTHO05D013190 9.2e-16 86.7 81 56.8
Carub.0003s0510 Capsella rubella HOM05D011267 ORTHO05D013190 2.0e-15 85.5 66 66.7
BcaC05g30092 Brassica carinata HOM05D011267 ORTHO05D013190 1.1e-13 79.7 82 48.8
AL4G15700 Arabidopsis lyrata HOM05D007338 ORTHO05D013190 6.2e-12 73.9 78 48.7
AL4G15710 Arabidopsis lyrata HOM05D025523 ORTHO05D023653 2.3e-11 72.0 76 46.1
AL6G45810 Arabidopsis lyrata HOM05D025523 ORTHO05D023653 2.3e-11 72.0 76 46.1
AT4G11393 Arabidopsis thaliana HOM05D025523 ORTHO05D023653 6.8e-11 70.5 76 44.7
CARHR179090 Cardamine hirsuta HOM05D025523 ORTHO05D023653 4.4e-10 67.8 77 45.5
CARHR131460 Cardamine hirsuta HOM05D025523 ORTHO05D023653 5.8e-10 67.4 77 46.8
BraA09t37396Z Brassica rapa HOM05D024172 ORTHO05D024522 1.9e-08 62.4 79 43.0
A09p17680 Brassica napus HOM05D024172 ORTHO05D024522 2.4e-08 62.0 79 41.8
BNapus_Darmor_BZH_scaffold_155p00070 Brassica napus HOM05D024172 ORTHO05D024522 2.4e-08 62.0 79 41.8
C09p22020 Brassica napus HOM05D024172 ORTHO05D024522 2.4e-08 62.0 79 41.8
BolC9t55107H Brassica oleracea HOM05D024172 ORTHO05D024522 2.4e-08 62.0 79 41.8
AT1G34047 Arabidopsis thaliana HOM05D007338 ORTHO05D009406 2.1e-07 58.9 82 43.9
AL5G42110 Arabidopsis lyrata HOM05D007338 ORTHO05D009406 6.6e-06 53.9 80 45.0


User provided reference genes

Program Settings