Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 2.2e-221 771.9 383 100.0
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 4.9e-176 621.3 376 83.2
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 1.4e-175 619.8 382 82.2
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.5e-172 609.8 384 81.5
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 1.6e-171 606.3 308 97.1
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 1.8e-170 602.8 309 96.4
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 1.7e-168 596.3 308 95.1
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 4.2e-167 591.7 346 85.8
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 9.3e-167 590.5 308 94.5
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 4.6e-166 588.2 341 85.9
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 5.6e-164 581.3 308 91.2
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 1.4e-162 576.6 308 91.9
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 1.4e-162 576.6 313 91.1
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 2.4e-162 575.9 308 91.6
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 2.6e-161 572.4 307 91.5
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 6.2e-155 551.2 314 87.9
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 1.1e-154 550.4 308 83.4
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 6.5e-136 488.0 299 75.6
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 1.9e-135 486.5 299 75.6
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 3.2e-135 485.7 299 76.9
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 4.2e-135 485.3 308 73.7
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 2.1e-134 483.0 299 75.3
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.4e-133 480.3 308 73.4
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 2.3e-133 479.6 296 73.3
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 5.1e-133 478.4 299 74.6
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 1.5e-132 476.9 299 75.3
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 3.3e-132 475.7 308 72.7
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 3.3e-132 475.7 304 72.0
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 4.3e-132 475.3 305 70.8
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 5.7e-132 474.9 308 72.7
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.3e-131 473.8 305 70.8
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.3e-131 473.8 308 73.4
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 1.7e-131 473.4 308 72.4
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 3.7e-131 472.2 299 74.2
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 4.8e-131 471.9 308 72.1
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 8.2e-131 471.1 299 74.2
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 1.8e-130 469.9 308 72.1
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 9.1e-130 467.6 308 70.8
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 2.0e-129 466.5 305 71.1
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.0e-129 466.5 308 71.1
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.5e-129 465.3 299 73.2
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 4.5e-129 465.3 308 71.4
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 4.5e-129 465.3 309 69.9
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 4.5e-129 465.3 308 70.1
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.0e-128 464.2 320 68.8
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 1.3e-128 463.8 308 71.4
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 2.9e-128 462.6 308 71.4
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 3.8e-128 462.2 308 71.8
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 6.5e-128 461.5 308 69.8
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.5e-128 461.5 308 70.8
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 6.5e-128 461.5 310 68.4
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 8.5e-128 461.1 304 70.7
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 8.5e-128 461.1 310 68.4
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 2.5e-127 459.5 311 67.5
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 5.5e-127 458.4 308 69.8
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 5.5e-127 458.4 308 70.1
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 7.2e-127 458.0 308 69.5
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 7.2e-127 458.0 306 69.3
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 7.2e-127 458.0 308 70.1
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 1.2e-126 457.2 306 69.6
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 1.6e-126 456.8 308 68.2
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 3.6e-126 455.7 308 69.2
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 3.6e-126 455.7 310 67.7
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 6.1e-126 454.9 310 70.3
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 1.0e-125 454.1 306 69.0
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.8e-125 453.4 309 69.9
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.3e-125 453.0 308 68.8
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 3.0e-125 452.6 307 69.4
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 3.9e-125 452.2 306 68.6
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 8.8e-125 451.1 308 70.1
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 2.0e-124 449.9 308 68.8
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 3.3e-124 449.1 332 66.0
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 3.3e-124 449.1 308 68.2
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 5.7e-124 448.4 304 70.1
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 7.4e-124 448.0 308 68.5
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 7.4e-124 448.0 308 67.2
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.3e-123 447.2 299 68.9
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 2.2e-123 446.4 308 67.2
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 2.2e-123 446.4 308 69.5
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.8e-123 445.3 299 69.9
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.8e-122 443.4 308 66.6
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 3.1e-122 442.6 306 66.3
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 5.3e-122 441.8 306 66.3
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 9.1e-122 441.0 297 67.3
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 1.2e-121 440.7 308 67.9
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 7.7e-121 438.0 382 56.3
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 1.7e-120 436.8 306 66.3
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 3.8e-120 435.6 352 63.4
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 5.0e-120 435.3 304 64.8
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 5.0e-120 435.3 308 64.3
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 8.5e-120 434.5 309 68.6
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 1.5e-119 433.7 306 67.0
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 1.5e-119 433.7 304 67.1
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 1.9e-119 433.3 306 66.0
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 9.4e-119 431.0 308 64.3
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 6.1e-118 428.3 380 56.8
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 1.0e-117 427.6 345 62.3
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 8.8e-117 424.5 304 67.1
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 1.3e-115 420.6 308 66.9
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 4.8e-115 418.7 319 65.8
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 4.5e-113 412.1 296 64.9
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 1.7e-112 410.2 308 64.0
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 2.3e-109 399.8 296 63.5
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 5.7e-108 395.2 269 67.7
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 4.5e-105 385.6 210 90.0
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.5e-103 379.8 262 67.9
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 7.2e-103 378.3 262 67.2
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 2.1e-102 376.7 307 60.6
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.6e-97 360.5 237 70.0
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 8.9e-93 344.7 302 52.6
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.8e-90 337.0 303 55.4
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 1.9e-87 327.0 289 55.0
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 4.0e-85 319.3 301 52.2
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 2.6e-84 316.6 263 61.2
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 4.4e-84 315.8 200 74.5
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 2.9e-83 313.2 215 66.5
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.7e-81 306.6 295 52.5
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 4.1e-74 282.7 176 72.2
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 5.1e-72 275.8 176 70.5
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 3.7e-67 259.6 170 77.1
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.2e-65 254.6 237 48.5
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 1.2e-60 238.0 130 91.5
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 2.0e-60 237.3 177 63.8
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 9.9e-60 235.0 180 66.1
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.5e-55 220.3 142 72.5
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 5.4e-50 202.6 188 51.6
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 4.3e-47 193.0 127 70.9
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 5.5e-42 176.0 130 61.5
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 5.5e-42 176.0 130 64.6
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 3.9e-40 169.9 106 73.6
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 2.2e-35 154.1 109 67.0
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 6.0e-33 146.0 156 50.0
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 6.7e-32 142.5 112 60.7
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.5e-31 141.4 109 62.4
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 9.6e-31 138.7 109 63.3
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 2.1e-17 94.4 76 57.9
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.2e-14 84.3 52 67.3
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 3.9e-08 63.5 27 100.0
Medtr5g089930 Medicago truncatula HOM05D005736 ORTHO05D000004 1.7e-06 58.2 32 75.0
Medtr1g083320 Medicago truncatula HOM05D005736 ORTHO05D260045 2.8e-06 57.4 27 88.9
Medtr4g069930 Medicago truncatula HOM05D005736 ORTHO05D258015 8.2e-06 55.8 28 82.1


User provided reference genes

Program Settings