Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G05450 Arabidopsis thaliana HOM05D004201 ORTHO05D011677 1.0e-225 786.6 441 100.0
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.6e-101 372.5 477 52.8
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 6.6e-76 288.9 423 47.5
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-57 228.4 220 62.3
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.2e-56 224.9 219 61.6
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.4e-56 223.4 219 61.2
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.3e-55 221.5 166 68.7
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.3e-44 184.1 237 51.9
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 1.7e-42 177.9 241 50.6
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 2.8e-42 177.2 208 51.4
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.9e-39 167.2 271 43.5
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 6.5e-39 166.0 212 49.1
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 5.5e-38 162.9 207 47.8
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 4.8e-34 149.8 207 53.1
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.4e-33 147.5 230 46.1
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.8e-26 124.0 385 32.5
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.4e-25 120.9 221 38.9
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.1e-25 120.6 396 29.5
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.6e-24 118.2 72 80.6
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.1e-21 107.8 57 86.0
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.2e-18 97.8 242 36.0
Carub.0003s0473 Capsella rubella HOM05D004201 ORTHO05D011677 6.8e-12 76.3 123 46.3
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.4e-11 73.6 236 33.1
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 9.8e-11 72.4 424 25.7
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 3.7e-10 70.5 143 41.3
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.4e-09 68.6 422 25.4
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.1e-09 67.4 239 32.6
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 3.1e-09 67.4 162 37.0
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 3.1e-09 67.4 172 34.3
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 5.4e-09 66.6 140 37.9
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 7.0e-09 66.2 241 29.5
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 9.2e-09 65.9 68 48.5
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 9.2e-09 65.9 148 35.1
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 9.2e-09 65.9 212 34.0
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 9.2e-09 65.9 140 37.9
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-08 65.5 140 37.9
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 5.9e-08 63.2 151 36.4
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-07 62.4 137 36.5
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-07 62.4 137 36.5
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 1.3e-07 62.0 224 31.2
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 1.7e-07 61.6 140 37.9
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 1.7e-07 61.6 140 37.9
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 2.3e-07 61.2 164 33.5
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 2.3e-07 61.2 164 33.5
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 2.3e-07 61.2 164 33.5
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.3e-07 61.2 224 28.1
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 2.9e-07 60.8 231 31.6
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 5.0e-07 60.1 140 35.7
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 5.0e-07 60.1 163 31.9
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 6.6e-07 59.7 408 24.3
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 6.6e-07 59.7 140 37.1
AL3G16020 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.6e-07 59.3 37 73.0
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 1.9e-06 58.2 64 57.8
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 2.5e-06 57.8 163 31.9
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 3.3e-06 57.4 183 30.6
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.3e-06 57.0 145 37.2
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 5.6e-06 56.6 60 51.7
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.6e-06 56.6 232 28.0
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 9.5e-06 55.8 231 30.3


User provided reference genes

Program Settings